matalpha1 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 1 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 1 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 1 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 1 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 1
in 'msaprobs'
muscle

The residue for every species at site 1 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

K.aestuari M Site 11
C.dubliniensis M Site 7
C.glabrata M Site 11
T.delbrueckii M Site 1
L.thermotolerans M Site 11
C.heterostrophus M Site 10
P.alliaceus M Site 10
L.starkeyi M Site 69
K.africana M Site 7
C.albicans M Site 7
S.paradoxus M Site 11
S.passalidarum M Site 7
L.kluyveri M Site 5
T.blattae M Site 5
R.secalis.b M Site 13
Z.rouxii M Site 3
N.fumigata M Site 10
P.anserina M Site 11
P.tannophilus M Site 1
K.lactis M Site 11
E.cymbalariae M Site 8
M.bicuspidata M Site 12
N.crassa M Site 11
F.oxysporum M Site 60
N.dairenensis M Site 56
Species Residue at Site 1
in 'msaprobs'
muscle

The residue for every species at site 1 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

H.polymorpha M Site 4
H.burtonii M Site 7
A.rubescens M Site 10
C.carbonum M Site 10
S.castellii M Site 5
H.capsulatum M Site 9
B.inositovora -  
C.lusitaniae M Site 61
D.hansenii M Site 9
A.terreus M Site 9
C.posadasii M Site 9
S.fimicola M Site 11
S.cerevisiae M Site 11
N.africana M Site 11
S.kudriavzevii M Site 11
C.tanzawaensis M Site 9
N.fulvescens M Site 3
R.secalis.a -  
S.bayanus M Site 11
P.pastoris -  
S.equina M Site 11
D.bruxellensis -  
Y.lipolytica M Site 7
K.wickerhamii M Site 11
C.tropicalis M Site 7

Generated by PhyloBot at 05:26, July 21st 2018
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