V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 1 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 1 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 1 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 1 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 1
in 'msaprobs'
muscle

The residue for every species at site 1 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

M_musculus_16 M Site 45
O_mordax_3 M Site 76
D_rerio_3 M Site 76
M_grisea_16 M Site 50
M_grisea_11 M Site 60
A_niger_3 M Site 66
C_glabrata_3 M Site 67
A_terreus_11 M Site 65
A_terreus_16 M Site 50
C_parvum_16 M Site 64
T_adhaerens_3 M Site 65
T_castaneum_3 M Site 65
X_tropicalis_3 M Site 64
G_zeae_3 M Site 66
L_elongisporus_3 M Site 67
A_fumigatus_3 M Site 66
M_grisea_3 M Site 66
S_pombe_3 M Site 66
C_albicans_3 M Site 62
B_bovis_16 M Site 77
C_muris_3 M Site 77
S_purpuratus_3 M Site 77
C_immitis_16 M Site 50
M_mulatta_16 M Site 45
Y_lipolytica_3 M Site 63
Species Residue at Site 1
in 'msaprobs'
muscle

The residue for every species at site 1 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

B_fuckeliana_16 M Site 50
C_immitis_11 M Site 65
A_mellifera_16 M Site 47
A_gossypii_11 M Site 62
T_annulata_16 M Site 77
N_vectensis_3 M Site 75
S_Salar_16 M Site 45
L_elongisporus_16 M Site 51
C_neoformans_16 M Site 49
C_neoformans_11 M Site 80
P_knowlesi_16 M Site 65
A_terreus_3 M Site 64
A_pisum_3 M Site 64
S_Salar_3 M Site 76
P_marneffei_3 M Site 66
P_stipitis_3 M Site 67
A_fumigatus_11 M Site 65
A_gossypii_3 M Site 67
C_hominis_3 M Site 79
C_muris_16 M Site 63
X_laevis_16 M Site 45
M_mulatta_3 M Site 65
M_brevicollis_16 M Site 41
K_lactis_3 M Site 67
T_castaneum_16 M Site 47
Species Residue at Site 1
in 'msaprobs'
muscle

The residue for every species at site 1 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_intestinalis_16 M Site 47
E_caballus_3 M Site 65
C_globosum_3 -  
A_clavatus_3 M Site 66
N_crassa_11 M Site 61
N_crassa_16 M Site 50
X_tropicalis_16 M Site 45
P_anserina_11 M Site 65
P_vivax_16 M Site 65
P_anserina_16 M Site 50
H_sapiens_16 M Site 45
T_annulata_3 M Site 76
C_intestinalis_3 M Site 77
L_elongisporus_11 M Site 62
A_gossypii_16 M Site 37
A_pisum_16 M Site 45
N_crassa_3 M Site 67
V_polyspora_3 M Site 66
S_cerevisiae_3 M Site 67
P_marneffei_16 M Site 51
D_hansenii_3 M Site 67
S_pombe_11 M Site 66
T_guttata_3 M Site 64
S_pombe_16 M Site 49
B_fuckeliana_3 -  
Species Residue at Site 1
in 'msaprobs'
muscle

The residue for every species at site 1 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

T_adhaerens_16 M Site 51
S_cerevisiae_16 M Site 35
R_norvegicus_3 M Site 65
S_cerevisiae_11 M Site 61
B_taurus_3 M Site 65
C_familiaris_3 M Site 65
P_anserina_3 M Site 67
P_marneffei_11 M Site 65
P_knowlesi_3 M Site 77
T_guttata_16 M Site 45
B_fuckeliana_11 M Site 65
C_cinerea_okayama_3 M Site 66
P_falciparum_16 M Site 65
N_vectensis_16 M Site 41
A_niger_11 M Site 65
A_niger_16 M Site 50
C_parvum_3 M Site 77
S_purpuratus_16 M Site 46
B_floridae_3 M Site 74
Y_lipolytica_16 M Site 50
A_mellifera_3 M Site 66
A_clavatus_16 M Site 50
A_clavatus_11 M Site 65
S_sclerotiorum_3 M Site 67
P_falciparum_3 M Site 77
Species Residue at Site 1
in 'msaprobs'
muscle

The residue for every species at site 1 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

D_discoideum_16 M Site 63
C_cinerea_okayama_11 -  
D_hansenii_16 M Site 70
D_hansenii_11 M Site 62
C_cinerea_okayama_16 M Site 48
P_vivax_3 M Site 77
C_immitis_3 M Site 66
G_zeae_11 M Site 65
C_neoformans_3 M Site 64
H_sapiens_3 M Site 65
G_zeae_16 M Site 50
Y_lipolytica_11 M Site 64
M_brevicollis_3 M Site 79
D_discoideum_3 M Site 57
P_stipitis_16 M Site 52
C_albicans_16 M Site 52
C_albicans_11 M Site 62
P_stipitis_11 M Site 62
X_laevis_3 M Site 64
C_glabrata_11 M Site 61
E_caballus_16 M Site 45
C_glabrata_16 M Site 37
V_polyspora_11 M Site 64
V_polyspora_16 M Site 34
C_hominis_16 M Site 64
Species Residue at Site 1
in 'msaprobs'
muscle

The residue for every species at site 1 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_globosum_11 M Site 65
C_globosum_16 M Site 48
O_mordax_16 M Site 39
D_rerio_16 M Site 45
B_bovis_3 M Site 64
B_floridae_16 M Site 47
M_musculus_3 M Site 65
A_fumigatus_16 M Site 50
C_familiaris_16 M Site 45
K_lactis_11 M Site 61
K_lactis_16 M Site 1
B_taurus_16 M Site 45
S_sclerotiorum_16 M Site 50
S_sclerotiorum_11 M Site 65
R_norvegicus_16 M Site 45

Generated by PhyloBot at 03:24, October 21st 2018
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