Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 1 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 1 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 1 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 1 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 1
in 'msaprobs'
muscle

The residue for every species at site 1 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Tdel.paralog2 M Site 55
Clus.ancMcm1 M Site 69
Tdel.paralog1 M Site 87
Kpol.paralog2 M Site 87
Kpol.paralog1 M Site 87
Tpha.paralog1 M Site 71
Tpha.paralog2 M Site 104
Klac.ancMcm1 M Site 87
Cgla.paralog1.duplicate M Site 87
Ncas.Paralog2 M Site 19
Kthe.ancMcm1 M Site 87
Scer.Paralog2 M Site 51
Kwal.ancMcm1 M Site 87
Xafr.paralog1.duplicate M Site 87
Scer.Paralog1 M Site 87
Sbay.paralog1 M Site 87
Ncas.paralog1.duplicate M Site 87
Lklu.ancMcm1 M Site 85
Calb.ancMcm1 M Site 59
Ecym.ancMcm1 M Site 87
Zrou.paralog2 M Site 87
Zrou.paralog1 M Site 87
Xnag.paralog1 M Site 76
Tpha.paralog1.duplicate M Site 87
Xnag.paralog2 M Site 47
Species Residue at Site 1
in 'msaprobs'
muscle

The residue for every species at site 1 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Kpol.paralog1.duplicate M Site 87
Sbay.Paralog2 M Site 47
Ylip.ancMcm1 M Site 71
Cgla.paralog2 M Site 19
Xbla.paralog1 M Site 43
Ndar.paralog1.duplicate M Site 87
Ndar.paralog2 M Site 1
Ndar.paralog1 M Site 87
Cgla.paralog1 M Site 59
Xbla.paralog1.duplicate M Site 68
Lelo.ancMcm1 M Site 71
Xafr.paralog1 M Site 87
Xafr.paralog2 M Site 45
Ncas.paralog1 M Site 87
ABR.ancMcm1 M Site 87

Generated by PhyloBot at 03:35, October 21st 2018
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