If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016
Overview | Alignments | Sites | Trees | Ancestors | Mutations
What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 81 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.
| Species | Residue at Site 81 in 'muscle' |
msaprobs
The residue for every species at site 81 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number. |
||
|---|---|---|---|---|
| Tdel.paralog2 | AHRMEQSQEQ | E | NKKMGHN--- | Site 200 |
| Clus.ancMcm1 | EVTDSAKLES | N | EDVMGAP--- | Site 103 |
| Tdel.paralog1 | ---------- | - | -----MS--- | |
| Kpol.paralog2 | ---------- | - | -----MV--- | |
| Kpol.paralog1 | ---------- | - | -----MS--- | |
| Tpha.paralog1 | MEEPIAKPKV | G | ETIVADS--- | Site 154 |
| Tpha.paralog2 | ---------- | - | ---------- | |
| Klac.ancMcm1 | ---------- | - | -----MS--- | |
| Cgla.paralog1.duplicate | ---------- | - | -----MS--- | |
| Ncas.Paralog2 | DEDDEEEEDT | L | NLNREEL--- | Site 117 |
| Kthe.ancMcm1 | ---------- | - | -----MS--- | |
| Scer.Paralog2 | VETNEPTKPI | R | RLSTPSP--- | Site 115 |
| Kwal.ancMcm1 | ---------- | - | -----MS--- | |
| Xafr.paralog1.duplicate | ---------- | - | -----MS--- | |
| Scer.Paralog1 | ---------- | - | -----MS--- | |
| Sbay.paralog1 | ---------- | - | -----MS--- | |
| Ncas.paralog1.duplicate | ---------- | - | -----MS--- | |
| Lklu.ancMcm1 | ---------- | - | ---MSNT--- | |
| Calb.ancMcm1 | GNEGNSHSTN | N | NNNSNNS--- | Site 104 |
| Ecym.ancMcm1 | ---------- | - | -----MS--- | |
| Zrou.paralog2 | ---------- | - | -----M---- | |
| Zrou.paralog1 | ---------- | - | -----MS--- | |
| Xnag.paralog1 | -----MSDQE | L | KEDPTLS--- | Site 80 |
| Tpha.paralog1.duplicate | ---------- | - | -----MS--- | |
| Xnag.paralog2 | GRSTKGVDSA | G | SNNSDAS--- | Site 71 | Species | Residue at Site 81 in 'muscle' |
msaprobs
The residue for every species at site 81 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number. |
| Kpol.paralog1.duplicate | ---------- | - | -----MG--- | |
| Sbay.Paralog2 | DSNGSVRRPP | S | QLMQDEQ--- | Site 120 |
| Ylip.ancMcm1 | MSDEGLADPS | L | GDSLQQS--- | Site 197 |
| Cgla.paralog2 | AHMPGQRPTV | G | GGDEVRGTRD | Site 117 |
| Xbla.paralog1 | STDNQVSSTI | T | NSNSAVT--- | Site 186 |
| Ndar.paralog1.duplicate | ---------- | - | -----MS--- | |
| Ndar.paralog2 | YEDEDEEDIS | L | NKEELSGNLG | Site 94 |
| Ndar.paralog1 | ---------- | - | -----MS--- | |
| Cgla.paralog1 | EDKVDDIDDD | G | SMTGSVS--- | Site 106 |
| Xbla.paralog1.duplicate | IEDNTESSTH | T | DQLNGTP--- | Site 199 |
| Lelo.ancMcm1 | MSLKGEDGPE | Y | ENSANGN--- | Site 105 |
| Xafr.paralog1 | ---------- | - | -----MS--- | |
| Xafr.paralog2 | NTKEPRRPPR | G | PSMNTTS--- | Site 121 |
| Ncas.paralog1 | ---------- | - | -----MS--- | |
| ABR.ancMcm1 | ---------- | - | -----MS--- |
Generated by PhyloBot at 12:40, January 19th 2021
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