Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 81 in Alignment 'muscle'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 81 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 81 in 'muscle'
to Sites in 'msaprobs'

What percentage of the residues at this site in muscle are inferred to be a single site (i.e. homologous) in the alignments produced by msaprobs? A value of 100% indicates that the existence of site 81 is reproduced using the msaprobs method. Values less than 100% indicate that msaprobs made different homology inferences for the residues at this site.


Species Residue at Site 81
in 'muscle'
msaprobs

The residue for every species at site 81 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Tdel.paralog2 AHRMEQSQEQ E NKKMGHN--- Site 200
Clus.ancMcm1 EVTDSAKLES N EDVMGAP--- Site 103
Tdel.paralog1 ---------- - -----MS---  
Kpol.paralog2 ---------- - -----MV---  
Kpol.paralog1 ---------- - -----MS---  
Tpha.paralog1 MEEPIAKPKV G ETIVADS--- Site 154
Tpha.paralog2 ---------- - ----------  
Klac.ancMcm1 ---------- - -----MS---  
Cgla.paralog1.duplicate ---------- - -----MS---  
Ncas.Paralog2 DEDDEEEEDT L NLNREEL--- Site 117
Kthe.ancMcm1 ---------- - -----MS---  
Scer.Paralog2 VETNEPTKPI R RLSTPSP--- Site 115
Kwal.ancMcm1 ---------- - -----MS---  
Xafr.paralog1.duplicate ---------- - -----MS---  
Scer.Paralog1 ---------- - -----MS---  
Sbay.paralog1 ---------- - -----MS---  
Ncas.paralog1.duplicate ---------- - -----MS---  
Lklu.ancMcm1 ---------- - ---MSNT---  
Calb.ancMcm1 GNEGNSHSTN N NNNSNNS--- Site 104
Ecym.ancMcm1 ---------- - -----MS---  
Zrou.paralog2 ---------- - -----M----  
Zrou.paralog1 ---------- - -----MS---  
Xnag.paralog1 -----MSDQE L KEDPTLS--- Site 80
Tpha.paralog1.duplicate ---------- - -----MS---  
Xnag.paralog2 GRSTKGVDSA G SNNSDAS--- Site 71
Species Residue at Site 81
in 'muscle'
msaprobs

The residue for every species at site 81 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Kpol.paralog1.duplicate ---------- - -----MG---  
Sbay.Paralog2 DSNGSVRRPP S QLMQDEQ--- Site 120
Ylip.ancMcm1 MSDEGLADPS L GDSLQQS--- Site 197
Cgla.paralog2 AHMPGQRPTV G GGDEVRGTRD Site 117
Xbla.paralog1 STDNQVSSTI T NSNSAVT--- Site 186
Ndar.paralog1.duplicate ---------- - -----MS---  
Ndar.paralog2 YEDEDEEDIS L NKEELSGNLG Site 94
Ndar.paralog1 ---------- - -----MS---  
Cgla.paralog1 EDKVDDIDDD G SMTGSVS--- Site 106
Xbla.paralog1.duplicate IEDNTESSTH T DQLNGTP--- Site 199
Lelo.ancMcm1 MSLKGEDGPE Y ENSANGN--- Site 105
Xafr.paralog1 ---------- - -----MS---  
Xafr.paralog2 NTKEPRRPPR G PSMNTTS--- Site 121
Ncas.paralog1 ---------- - -----MS---  
ABR.ancMcm1 ---------- - -----MS---  

Generated by PhyloBot at 12:40, January 19th 2021
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