Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 79 in Alignment 'muscle'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 79 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 79 in 'muscle'
to Sites in 'msaprobs'

What percentage of the residues at this site in muscle are inferred to be a single site (i.e. homologous) in the alignments produced by msaprobs? A value of 100% indicates that the existence of site 79 is reproduced using the msaprobs method. Values less than 100% indicate that msaprobs made different homology inferences for the residues at this site.


Species Residue at Site 79
in 'muscle'
msaprobs

The residue for every species at site 79 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Tdel.paralog2 CKAHRMEQSQ E QENKKMGHN- Site 198
Clus.ancMcm1 MSEVTDSAKL E SNEDVMGAP- Site 101
Tdel.paralog1 ---------- - -------MS-  
Kpol.paralog2 ---------- - -------MV-  
Kpol.paralog1 ---------- - -------MS-  
Tpha.paralog1 --MEEPIAKP K VGETIVADS- Site 80
Tpha.paralog2 ---------- - ----------  
Klac.ancMcm1 ---------- - -------MS-  
Cgla.paralog1.duplicate ---------- - -------MS-  
Ncas.Paralog2 GEDEDDEEEE D TLNLNREEL- Site 115
Kthe.ancMcm1 ---------- - -------MS-  
Scer.Paralog2 GDVETNEPTK P IRRLSTPSP- Site 113
Kwal.ancMcm1 ---------- - -------MS-  
Xafr.paralog1.duplicate ---------- - -------MS-  
Scer.Paralog1 ---------- - -------MS-  
Sbay.paralog1 ---------- - -------MS-  
Ncas.paralog1.duplicate ---------- - -------MS-  
Lklu.ancMcm1 ---------- - -----MSNT-  
Calb.ancMcm1 SQGNEGNSHS T NNNNNSNNS- Site 102
Ecym.ancMcm1 ---------- - -------MS-  
Zrou.paralog2 ---------- - -------M--  
Zrou.paralog1 ---------- - -------MS-  
Xnag.paralog1 -------MSD Q ELKEDPTLS- Site 4
Tpha.paralog1.duplicate ---------- - -------MS-  
Xnag.paralog2 TRGRSTKGVD S AGSNNSDAS- Site 69
Species Residue at Site 79
in 'muscle'
msaprobs

The residue for every species at site 79 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Kpol.paralog1.duplicate ---------- - -------MG-  
Sbay.Paralog2 AIDSNGSVRR P PSQLMQDEQ- Site 118
Ylip.ancMcm1 --MSDEGLAD P SLGDSLQQS- Site 156
Cgla.paralog2 MPAHMPGQRP T VGGGDEVRGT Site 115
Xbla.paralog1 TDSTDNQVSS T ITNSNSAVT- Site 184
Ndar.paralog1.duplicate ---------- - -------MS-  
Ndar.paralog2 DDYEDEDEED I SLNKEELSGN Site 92
Ndar.paralog1 ---------- - -------MS-  
Cgla.paralog1 NMEDKVDDID D DGSMTGSVS- Site 104
Xbla.paralog1.duplicate SDIEDNTESS T HTDQLNGTP- Site 197
Lelo.ancMcm1 --MSLKGEDG P EYENSANGN- Site 103
Xafr.paralog1 ---------- - -------MS-  
Xafr.paralog2 EENTKEPRRP P RGPSMNTTS- Site 119
Ncas.paralog1 ---------- - -------MS-  
ABR.ancMcm1 ---------- - -------MS-  

Generated by PhyloBot at 13:00, January 19th 2021
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