Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 76 in Alignment 'muscle'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 76 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 76 in 'muscle'
to Sites in 'msaprobs'

What percentage of the residues at this site in muscle are inferred to be a single site (i.e. homologous) in the alignments produced by msaprobs? A value of 100% indicates that the existence of site 76 is reproduced using the msaprobs method. Values less than 100% indicate that msaprobs made different homology inferences for the residues at this site.


Species Residue at Site 76
in 'muscle'
msaprobs

The residue for every species at site 76 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Tdel.paralog2 FTRCKAHRME Q SQEQENKKMG Site 195
Clus.ancMcm1 ---MSEVTDS A KLESNEDVMG Site 98
Tdel.paralog1 ---------- - ----------  
Kpol.paralog2 ---------- - ----------  
Kpol.paralog1 ---------- - ----------  
Tpha.paralog1 -----MEEPI A KPKVGETIVA Site 77
Tpha.paralog2 ---------- - ----------  
Klac.ancMcm1 ---------- - ----------  
Cgla.paralog1.duplicate ---------- - ----------  
Ncas.Paralog2 LECGEDEDDE E EEDTLNLNRE Site 112
Kthe.ancMcm1 ---------- - ----------  
Scer.Paralog2 PITGDVETNE P TKPIRRLSTP Site 110
Kwal.ancMcm1 ---------- - ----------  
Xafr.paralog1.duplicate ---------- - ----------  
Scer.Paralog1 ---------- - ----------  
Sbay.paralog1 ---------- - ----------  
Ncas.paralog1.duplicate ---------- - ----------  
Lklu.ancMcm1 ---------- - --------MS  
Calb.ancMcm1 NEFSQGNEGN S HSTNNNNNSN Site 99
Ecym.ancMcm1 ---------- - ----------  
Zrou.paralog2 ---------- - ----------  
Zrou.paralog1 ---------- - ----------  
Xnag.paralog1 ---------- M SDQELKEDPT Site 1
Tpha.paralog1.duplicate ---------- - ----------  
Xnag.paralog2 RSVTRGRSTK G VDSAGSNNSD Site 66
Species Residue at Site 76
in 'muscle'
msaprobs

The residue for every species at site 76 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Kpol.paralog1.duplicate ---------- - ----------  
Sbay.Paralog2 NIAAIDSNGS V RRPPSQLMQD Site 115
Ylip.ancMcm1 -----MSDEG L ADPSLGDSLQ Site 80
Cgla.paralog2 QVQMPAHMPG Q RPTVGGGDEV Site 112
Xbla.paralog1 SVTTDSTDNQ V SSTITNSNSA Site 181
Ndar.paralog1.duplicate ---------- - ----------  
Ndar.paralog2 NEEDDYEDED E EDISLNKEEL Site 76
Ndar.paralog1 ---------- - ----------  
Cgla.paralog1 NGNNMEDKVD D IDDDGSMTGS Site 101
Xbla.paralog1.duplicate --MSDIEDNT E SSTHTDQLNG Site 156
Lelo.ancMcm1 -----MSLKG E DGPEYENSAN Site 100
Xafr.paralog1 ---------- - ----------  
Xafr.paralog2 DLEEENTKEP R RPPRGPSMNT Site 116
Ncas.paralog1 ---------- - ----------  
ABR.ancMcm1 ---------- - ----------  

Generated by PhyloBot at 11:17, January 19th 2021
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