Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 75 in Alignment 'muscle'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 75 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 75 in 'muscle'
to Sites in 'msaprobs'

What percentage of the residues at this site in muscle are inferred to be a single site (i.e. homologous) in the alignments produced by msaprobs? A value of 100% indicates that the existence of site 75 is reproduced using the msaprobs method. Values less than 100% indicate that msaprobs made different homology inferences for the residues at this site.


Species Residue at Site 75
in 'muscle'
msaprobs

The residue for every species at site 75 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Tdel.paralog2 HFTRCKAHRM E QSQEQENKKM Site 156
Clus.ancMcm1 ----MSEVTD S AKLESNEDVM Site 90
Tdel.paralog1 ---------- - ----------  
Kpol.paralog2 ---------- - ----------  
Kpol.paralog1 ---------- - ----------  
Tpha.paralog1 ------MEEP I AKPKVGETIV Site 76
Tpha.paralog2 ---------- - ----------  
Klac.ancMcm1 ---------- - ----------  
Cgla.paralog1.duplicate ---------- - ----------  
Ncas.Paralog2 DLECGEDEDD E EEEDTLNLNR Site 111
Kthe.ancMcm1 ---------- - ----------  
Scer.Paralog2 KPITGDVETN E PTKPIRRLST Site 109
Kwal.ancMcm1 ---------- - ----------  
Xafr.paralog1.duplicate ---------- - ----------  
Scer.Paralog1 ---------- - ----------  
Sbay.paralog1 ---------- - ----------  
Ncas.paralog1.duplicate ---------- - ----------  
Lklu.ancMcm1 ---------- - ---------M  
Calb.ancMcm1 TNEFSQGNEG N SHSTNNNNNS Site 98
Ecym.ancMcm1 ---------- - ----------  
Zrou.paralog2 ---------- - ----------  
Zrou.paralog1 ---------- - ----------  
Xnag.paralog1 ---------- - MSDQELKEDP  
Tpha.paralog1.duplicate ---------- - ----------  
Xnag.paralog2 TRSVTRGRST K GVDSAGSNNS Site 65
Species Residue at Site 75
in 'muscle'
msaprobs

The residue for every species at site 75 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Kpol.paralog1.duplicate ---------- - ----------  
Sbay.Paralog2 GNIAAIDSNG S VRRPPSQLMQ Site 114
Ylip.ancMcm1 ------MSDE G LADPSLGDSL Site 76
Cgla.paralog2 RQVQMPAHMP G QRPTVGGGDE Site 111
Xbla.paralog1 NSVTTDSTDN Q VSSTITNSNS Site 180
Ndar.paralog1.duplicate ---------- - ----------  
Ndar.paralog2 ENEEDDYEDE D EEDISLNKEE Site 75
Ndar.paralog1 ---------- - ----------  
Cgla.paralog1 INGNNMEDKV D DIDDDGSMTG Site 100
Xbla.paralog1.duplicate ---MSDIEDN T ESSTHTDQLN Site 154
Lelo.ancMcm1 ------MSLK G EDGPEYENSA Site 76
Xafr.paralog1 ---------- - ----------  
Xafr.paralog2 GDLEEENTKE P RRPPRGPSMN Site 115
Ncas.paralog1 ---------- - ----------  
ABR.ancMcm1 ---------- - ----------  

Generated by PhyloBot at 11:33, January 19th 2021
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