If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016
Overview | Alignments | Sites | Trees | Ancestors | Mutations
What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 75 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.
| Species | Residue at Site 75 in 'muscle' |
msaprobs
The residue for every species at site 75 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number. |
||
|---|---|---|---|---|
| Tdel.paralog2 | HFTRCKAHRM | E | QSQEQENKKM | Site 156 |
| Clus.ancMcm1 | ----MSEVTD | S | AKLESNEDVM | Site 90 |
| Tdel.paralog1 | ---------- | - | ---------- | |
| Kpol.paralog2 | ---------- | - | ---------- | |
| Kpol.paralog1 | ---------- | - | ---------- | |
| Tpha.paralog1 | ------MEEP | I | AKPKVGETIV | Site 76 |
| Tpha.paralog2 | ---------- | - | ---------- | |
| Klac.ancMcm1 | ---------- | - | ---------- | |
| Cgla.paralog1.duplicate | ---------- | - | ---------- | |
| Ncas.Paralog2 | DLECGEDEDD | E | EEEDTLNLNR | Site 111 |
| Kthe.ancMcm1 | ---------- | - | ---------- | |
| Scer.Paralog2 | KPITGDVETN | E | PTKPIRRLST | Site 109 |
| Kwal.ancMcm1 | ---------- | - | ---------- | |
| Xafr.paralog1.duplicate | ---------- | - | ---------- | |
| Scer.Paralog1 | ---------- | - | ---------- | |
| Sbay.paralog1 | ---------- | - | ---------- | |
| Ncas.paralog1.duplicate | ---------- | - | ---------- | |
| Lklu.ancMcm1 | ---------- | - | ---------M | |
| Calb.ancMcm1 | TNEFSQGNEG | N | SHSTNNNNNS | Site 98 |
| Ecym.ancMcm1 | ---------- | - | ---------- | |
| Zrou.paralog2 | ---------- | - | ---------- | |
| Zrou.paralog1 | ---------- | - | ---------- | |
| Xnag.paralog1 | ---------- | - | MSDQELKEDP | |
| Tpha.paralog1.duplicate | ---------- | - | ---------- | |
| Xnag.paralog2 | TRSVTRGRST | K | GVDSAGSNNS | Site 65 | Species | Residue at Site 75 in 'muscle' |
msaprobs
The residue for every species at site 75 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number. |
| Kpol.paralog1.duplicate | ---------- | - | ---------- | |
| Sbay.Paralog2 | GNIAAIDSNG | S | VRRPPSQLMQ | Site 114 |
| Ylip.ancMcm1 | ------MSDE | G | LADPSLGDSL | Site 76 |
| Cgla.paralog2 | RQVQMPAHMP | G | QRPTVGGGDE | Site 111 |
| Xbla.paralog1 | NSVTTDSTDN | Q | VSSTITNSNS | Site 180 |
| Ndar.paralog1.duplicate | ---------- | - | ---------- | |
| Ndar.paralog2 | ENEEDDYEDE | D | EEDISLNKEE | Site 75 |
| Ndar.paralog1 | ---------- | - | ---------- | |
| Cgla.paralog1 | INGNNMEDKV | D | DIDDDGSMTG | Site 100 |
| Xbla.paralog1.duplicate | ---MSDIEDN | T | ESSTHTDQLN | Site 154 |
| Lelo.ancMcm1 | ------MSLK | G | EDGPEYENSA | Site 76 |
| Xafr.paralog1 | ---------- | - | ---------- | |
| Xafr.paralog2 | GDLEEENTKE | P | RRPPRGPSMN | Site 115 |
| Ncas.paralog1 | ---------- | - | ---------- | |
| ABR.ancMcm1 | ---------- | - | ---------- |
Generated by PhyloBot at 11:33, January 19th 2021
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