If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016
Overview | Alignments | Sites | Trees | Ancestors | Mutations
What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 363 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.
| Species | Residue at Site 363 in 'muscle' |
msaprobs
The residue for every species at site 363 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number. |
||
|---|---|---|---|---|
| Tdel.paralog2 | ---------- | - | ---------- | |
| Clus.ancMcm1 | ---------- | Q | HQAAAHQQQQ | Site 605 |
| Tdel.paralog1 | ---------- | Q | PQQLLNNPLK | Site 577 |
| Kpol.paralog2 | ---------- | - | ---------- | |
| Kpol.paralog1 | ---------- | K | HHVMTNNNLI | Site 593 |
| Tpha.paralog1 | ---------- | Q | AQQQPHKAAA | Site 459 |
| Tpha.paralog2 | ---------- | - | ---------- | |
| Klac.ancMcm1 | ---------- | Q | QQQQQQQQQQ | Site 590 |
| Cgla.paralog1.duplicate | ---------- | Q | QHMQVHQEQV | Site 597 |
| Ncas.Paralog2 | ---------- | - | ---------- | |
| Kthe.ancMcm1 | ---------- | Q | HGQQPHQQQQ | Site 590 |
| Scer.Paralog2 | ---------- | - | ---------- | |
| Kwal.ancMcm1 | ---------- | - | ---------- | |
| Xafr.paralog1.duplicate | ---------- | R | PNVSSNLTIQ | Site 597 |
| Scer.Paralog1 | ---------- | Q | QHHTQNSQPQ | Site 558 |
| Sbay.paralog1 | PQ-------- | T | QQPQQQQQQQ | Site 576 |
| Ncas.paralog1.duplicate | GVHSSILNNN | N | NNNSPLNQSE | Site 565 |
| Lklu.ancMcm1 | ---------- | S | TGAIPHPQAG | Site 608 |
| Calb.ancMcm1 | ---------- | Q | QQQQQQQQAQ | Site 591 |
| Ecym.ancMcm1 | ---------- | D | HVAAAHSVAA | Site 593 |
| Zrou.paralog2 | ---------- | - | ---------- | |
| Zrou.paralog1 | ---------- | A | GGLKPDPMKA | Site 590 |
| Xnag.paralog1 | ---------- | Q | MGQPPHLHQL | Site 432 |
| Tpha.paralog1.duplicate | ---------- | H | SGILNNNNSA | Site 595 |
| Xnag.paralog2 | ---------- | - | ---------- | Species | Residue at Site 363 in 'muscle' |
msaprobs
The residue for every species at site 363 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number. |
| Kpol.paralog1.duplicate | ---------- | N | QMVNPHMQPN | Site 590 |
| Sbay.Paralog2 | ---------- | - | ---------- | |
| Ylip.ancMcm1 | ---------- | A | RGPPPNMGGM | Site 634 |
| Cgla.paralog2 | ---------- | - | ---------- | |
| Xbla.paralog1 | QMVGIIPNHN | Q | NVQVQNAQGN | Site 535 |
| Ndar.paralog1.duplicate | SGTLGNQFST | Q | NQQQLQPTTQ | Site 590 |
| Ndar.paralog2 | ---------- | - | ---------- | |
| Ndar.paralog1 | ---------- | P | DANVTYSNEA | Site 607 |
| Cgla.paralog1 | ---------- | Q | NQNLLQQPQH | Site 605 |
| Xbla.paralog1.duplicate | ---------- | L | SQQQMYQQQQ | Site 592 |
| Lelo.ancMcm1 | ---------- | Q | QAAAAAAAAA | Site 584 |
| Xafr.paralog1 | ---------- | Q | AQAHAHAQQV | Site 596 |
| Xafr.paralog2 | ---------- | - | ---------- | |
| Ncas.paralog1 | ---------- | D | QSNLISQAYH | Site 597 |
| ABR.ancMcm1 | ---------- | D | HVAAAHSVAA | Site 604 |
Generated by PhyloBot at 12:42, January 19th 2021
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