Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 363 in Alignment 'muscle'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 363 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 363 in 'muscle'
to Sites in 'msaprobs'

What percentage of the residues at this site in muscle are inferred to be a single site (i.e. homologous) in the alignments produced by msaprobs? A value of 100% indicates that the existence of site 363 is reproduced using the msaprobs method. Values less than 100% indicate that msaprobs made different homology inferences for the residues at this site.


Species Residue at Site 363
in 'muscle'
msaprobs

The residue for every species at site 363 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Tdel.paralog2 ---------- - ----------  
Clus.ancMcm1 ---------- Q HQAAAHQQQQ Site 605
Tdel.paralog1 ---------- Q PQQLLNNPLK Site 577
Kpol.paralog2 ---------- - ----------  
Kpol.paralog1 ---------- K HHVMTNNNLI Site 593
Tpha.paralog1 ---------- Q AQQQPHKAAA Site 459
Tpha.paralog2 ---------- - ----------  
Klac.ancMcm1 ---------- Q QQQQQQQQQQ Site 590
Cgla.paralog1.duplicate ---------- Q QHMQVHQEQV Site 597
Ncas.Paralog2 ---------- - ----------  
Kthe.ancMcm1 ---------- Q HGQQPHQQQQ Site 590
Scer.Paralog2 ---------- - ----------  
Kwal.ancMcm1 ---------- - ----------  
Xafr.paralog1.duplicate ---------- R PNVSSNLTIQ Site 597
Scer.Paralog1 ---------- Q QHHTQNSQPQ Site 558
Sbay.paralog1 PQ-------- T QQPQQQQQQQ Site 576
Ncas.paralog1.duplicate GVHSSILNNN N NNNSPLNQSE Site 565
Lklu.ancMcm1 ---------- S TGAIPHPQAG Site 608
Calb.ancMcm1 ---------- Q QQQQQQQQAQ Site 591
Ecym.ancMcm1 ---------- D HVAAAHSVAA Site 593
Zrou.paralog2 ---------- - ----------  
Zrou.paralog1 ---------- A GGLKPDPMKA Site 590
Xnag.paralog1 ---------- Q MGQPPHLHQL Site 432
Tpha.paralog1.duplicate ---------- H SGILNNNNSA Site 595
Xnag.paralog2 ---------- - ----------  
Species Residue at Site 363
in 'muscle'
msaprobs

The residue for every species at site 363 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Kpol.paralog1.duplicate ---------- N QMVNPHMQPN Site 590
Sbay.Paralog2 ---------- - ----------  
Ylip.ancMcm1 ---------- A RGPPPNMGGM Site 634
Cgla.paralog2 ---------- - ----------  
Xbla.paralog1 QMVGIIPNHN Q NVQVQNAQGN Site 535
Ndar.paralog1.duplicate SGTLGNQFST Q NQQQLQPTTQ Site 590
Ndar.paralog2 ---------- - ----------  
Ndar.paralog1 ---------- P DANVTYSNEA Site 607
Cgla.paralog1 ---------- Q NQNLLQQPQH Site 605
Xbla.paralog1.duplicate ---------- L SQQQMYQQQQ Site 592
Lelo.ancMcm1 ---------- Q QAAAAAAAAA Site 584
Xafr.paralog1 ---------- Q AQAHAHAQQV Site 596
Xafr.paralog2 ---------- - ----------  
Ncas.paralog1 ---------- D QSNLISQAYH Site 597
ABR.ancMcm1 ---------- D HVAAAHSVAA Site 604

Generated by PhyloBot at 12:42, January 19th 2021
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