Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 356 in Alignment 'muscle'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 356 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 356 in 'muscle'
to Sites in 'msaprobs'

What percentage of the residues at this site in muscle are inferred to be a single site (i.e. homologous) in the alignments produced by msaprobs? A value of 100% indicates that the existence of site 356 is reproduced using the msaprobs method. Values less than 100% indicate that msaprobs made different homology inferences for the residues at this site.


Species Residue at Site 356
in 'muscle'
msaprobs

The residue for every species at site 356 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Tdel.paralog2 ---------- - ----------  
Clus.ancMcm1 ---------- - ------QHQA  
Tdel.paralog1 ---------- - ------QPQQ  
Kpol.paralog2 ---------- - ----------  
Kpol.paralog1 ---------- - ------KHHV  
Tpha.paralog1 ---------- - ------QAQQ  
Tpha.paralog2 ---------- - ----------  
Klac.ancMcm1 ---------- - ------QQQQ  
Cgla.paralog1.duplicate ---------- - ------QQHM  
Ncas.Paralog2 ---------- - ----------  
Kthe.ancMcm1 ---------- - ------QHGQ  
Scer.Paralog2 ---------- - ----------  
Kwal.ancMcm1 ---------- - ----------  
Xafr.paralog1.duplicate ---------- - ------RPNV  
Scer.Paralog1 Q--------- - ------QQHH  
Sbay.paralog1 QQHHAQNPQ- - ------TQQP  
Ncas.paralog1.duplicate NQAIANVGVH S SILNNNNNNN Site 558
Lklu.ancMcm1 ---------- - ------STGA  
Calb.ancMcm1 ---------- - ------QQQQ  
Ecym.ancMcm1 ---------- - ------DHVA  
Zrou.paralog2 ---------- - ----------  
Zrou.paralog1 ---------- - ------AGGL  
Xnag.paralog1 ---------- - ------QMGQ  
Tpha.paralog1.duplicate ---------- - ------HSGI  
Xnag.paralog2 ---------- - ----------  
Species Residue at Site 356
in 'muscle'
msaprobs

The residue for every species at site 356 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Kpol.paralog1.duplicate ---------- - ------NQMV  
Sbay.Paralog2 ---------- - ----------  
Ylip.ancMcm1 ---------- - ------ARGP  
Cgla.paralog2 ---------- - ----------  
Xbla.paralog1 QKPMDQNQMV G IIPNHNQNVQ Site 528
Ndar.paralog1.duplicate QTSVVSSSGT L GNQFSTQNQQ Site 583
Ndar.paralog2 ---------- - ----------  
Ndar.paralog1 ---------- - ------PDAN  
Cgla.paralog1 ---------- - ------QNQN  
Xbla.paralog1.duplicate ---------- - ------LSQQ  
Lelo.ancMcm1 ---------- - ------QQAA  
Xafr.paralog1 ---------- - ------QAQA  
Xafr.paralog2 ---------- - ----------  
Ncas.paralog1 ---------- - ------DQSN  
ABR.ancMcm1 ---------- - ------DHVA  

Generated by PhyloBot at 11:08, January 19th 2021
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