If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016
Overview | Alignments | Sites | Trees | Ancestors | Mutations
What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 339 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.
| Species | Residue at Site 339 in 'muscle' |
msaprobs
The residue for every species at site 339 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number. |
||
|---|---|---|---|---|
| Tdel.paralog2 | ---------- | - | ---------- | |
| Clus.ancMcm1 | ---------- | - | ---------- | |
| Tdel.paralog1 | ---------- | - | ---------- | |
| Kpol.paralog2 | ---------- | - | ---------- | |
| Kpol.paralog1 | ---------- | - | ---------- | |
| Tpha.paralog1 | ---------- | - | ---------- | |
| Tpha.paralog2 | ---------- | - | ---------- | |
| Klac.ancMcm1 | ---------- | - | ---------- | |
| Cgla.paralog1.duplicate | ---------- | - | ---------- | |
| Ncas.Paralog2 | ---------- | - | ---------- | |
| Kthe.ancMcm1 | ---------- | - | ---------- | |
| Scer.Paralog2 | ---------- | - | ---------- | |
| Kwal.ancMcm1 | ---------- | - | ---------- | |
| Xafr.paralog1.duplicate | ---------- | - | ---------- | |
| Scer.Paralog1 | KSQLLGGANP | N | QNSMIQQ--- | Site 550 |
| Sbay.paralog1 | KSQLL-GANP | N | QTPIIQQQHH | Site 558 |
| Ncas.paralog1.duplicate | NNMNLNGINS | M | NALNSMNQAI | Site 541 |
| Lklu.ancMcm1 | ---------- | - | ---------- | |
| Calb.ancMcm1 | ---------- | - | ---------- | |
| Ecym.ancMcm1 | ---------- | - | ---------- | |
| Zrou.paralog2 | ---------- | - | ---------- | |
| Zrou.paralog1 | ---------- | - | ---------- | |
| Xnag.paralog1 | ---------- | - | ---------- | |
| Tpha.paralog1.duplicate | ---------- | - | ---------- | |
| Xnag.paralog2 | ---------- | - | ---------- | Species | Residue at Site 339 in 'muscle' |
msaprobs
The residue for every species at site 339 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number. |
| Kpol.paralog1.duplicate | ---------- | - | ---------- | |
| Sbay.Paralog2 | ---------- | - | ---------- | |
| Ylip.ancMcm1 | ---------- | - | ---------- | |
| Cgla.paralog2 | ---------- | - | ---------- | |
| Xbla.paralog1 | LQNQLQKTAD | N | GIKQELQKPM | Site 511 |
| Ndar.paralog1.duplicate | QQVGMKREGN | S | NNMTIGQTSV | Site 564 |
| Ndar.paralog2 | ---------- | - | ---------- | |
| Ndar.paralog1 | ---------- | - | ---------- | |
| Cgla.paralog1 | ---------- | - | ---------- | |
| Xbla.paralog1.duplicate | IPQQSQNSAA | N | A--------- | Site 590 |
| Lelo.ancMcm1 | QQ-------- | - | ---------- | |
| Xafr.paralog1 | ---------- | - | ---------- | |
| Xafr.paralog2 | ---------- | - | ---------- | |
| Ncas.paralog1 | ---------- | - | ---------- | |
| ABR.ancMcm1 | ---------- | - | ---------- |
Generated by PhyloBot at 12:24, January 19th 2021
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