Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 333 in Alignment 'muscle'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 333 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 333 in 'muscle'
to Sites in 'msaprobs'

What percentage of the residues at this site in muscle are inferred to be a single site (i.e. homologous) in the alignments produced by msaprobs? A value of 100% indicates that the existence of site 333 is reproduced using the msaprobs method. Values less than 100% indicate that msaprobs made different homology inferences for the residues at this site.


Species Residue at Site 333
in 'muscle'
msaprobs

The residue for every species at site 333 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Tdel.paralog2 ---------- - ----------  
Clus.ancMcm1 ---------- - ----------  
Tdel.paralog1 N--------- - ----------  
Kpol.paralog2 ---------- - ----------  
Kpol.paralog1 L--------- - ----------  
Tpha.paralog1 ---------- - ----------  
Tpha.paralog2 ---------- - ----------  
Klac.ancMcm1 Q--------- - ----------  
Cgla.paralog1.duplicate ---------- - ----------  
Ncas.Paralog2 ---------- - ----------  
Kthe.ancMcm1 Q--------- - ----------  
Scer.Paralog2 ---------- - ----------  
Kwal.ancMcm1 ---------- - ----------  
Xafr.paralog1.duplicate ---------- - ----------  
Scer.Paralog1 ALKQEVKSQL L GGANPNQNSM Site 544
Sbay.paralog1 ALKQEVKSQL L -GANPNQTPI Site 553
Ncas.paralog1.duplicate TDIHQENNMN L NGINSMNALN Site 535
Lklu.ancMcm1 ---------- - ----------  
Calb.ancMcm1 ---------- - ----------  
Ecym.ancMcm1 ---------- - ----------  
Zrou.paralog2 ---------- - ----------  
Zrou.paralog1 ELHA------ - ----------  
Xnag.paralog1 QVPQ------ - ----------  
Tpha.paralog1.duplicate QQ-------- - ----------  
Xnag.paralog2 ---------- - ----------  
Species Residue at Site 333
in 'muscle'
msaprobs

The residue for every species at site 333 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Kpol.paralog1.duplicate QYNH------ - ----------  
Sbay.Paralog2 ---------- - ----------  
Ylip.ancMcm1 L--------- - ----------  
Cgla.paralog2 ---------- - ----------  
Xbla.paralog1 TSVGEHLQNQ L QKTADNGIKQ Site 505
Ndar.paralog1.duplicate QLPLQMQQVG M KREGNSNNMT Site 558
Ndar.paralog2 ---------- - ----------  
Ndar.paralog1 ---------- - ----------  
Cgla.paralog1 QL-------- - ----------  
Xbla.paralog1.duplicate QIRNQNIPQQ S QNSAANA--- Site 584
Lelo.ancMcm1 HAQLQHQQ-- - ----------  
Xafr.paralog1 ---------- - ----------  
Xafr.paralog2 ---------- - ----------  
Ncas.paralog1 ---------- - ----------  
ABR.ancMcm1 ---------- - ----------  

Generated by PhyloBot at 10:55, January 19th 2021
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