If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016
Overview | Alignments | Sites | Trees | Ancestors | Mutations
What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 331 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.
| Species | Residue at Site 331 in 'muscle' |
msaprobs
The residue for every species at site 331 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number. |
||
|---|---|---|---|---|
| Tdel.paralog2 | ---------- | - | ---------- | |
| Clus.ancMcm1 | ---------- | - | ---------- | |
| Tdel.paralog1 | QQN------- | - | ---------- | |
| Kpol.paralog2 | ---------- | - | ---------- | |
| Kpol.paralog1 | QDL------- | - | ---------- | |
| Tpha.paralog1 | ---------- | - | ---------- | |
| Tpha.paralog2 | ---------- | - | ---------- | |
| Klac.ancMcm1 | PQQ------- | - | ---------- | |
| Cgla.paralog1.duplicate | ---------- | - | ---------- | |
| Ncas.Paralog2 | ---------- | - | ---------- | |
| Kthe.ancMcm1 | PPQ------- | - | ---------- | |
| Scer.Paralog2 | ---------- | - | ---------- | |
| Kwal.ancMcm1 | ---------- | - | ---------- | |
| Xafr.paralog1.duplicate | ---------- | - | ---------- | |
| Scer.Paralog1 | AGALKQEVKS | Q | LLGGANPNQN | Site 542 |
| Sbay.paralog1 | PGALKQEVKS | Q | LL-GANPNQT | Site 551 |
| Ncas.paralog1.duplicate | VTTDIHQENN | M | NLNGINSMNA | Site 533 |
| Lklu.ancMcm1 | ---------- | - | ---------- | |
| Calb.ancMcm1 | ---------- | - | ---------- | |
| Ecym.ancMcm1 | ---------- | - | ---------- | |
| Zrou.paralog2 | ---------- | - | ---------- | |
| Zrou.paralog1 | PHELHA---- | - | ---------- | |
| Xnag.paralog1 | MQQVPQ---- | - | ---------- | |
| Tpha.paralog1.duplicate | PQQQ------ | - | ---------- | |
| Xnag.paralog2 | ---------- | - | ---------- | Species | Residue at Site 331 in 'muscle' |
msaprobs
The residue for every species at site 331 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number. |
| Kpol.paralog1.duplicate | NGQYNH---- | - | ---------- | |
| Sbay.Paralog2 | ---------- | - | ---------- | |
| Ylip.ancMcm1 | PGL------- | - | ---------- | |
| Cgla.paralog2 | ---------- | - | ---------- | |
| Xbla.paralog1 | IPTSVGEHLQ | N | QLQKTADNGI | Site 503 |
| Ndar.paralog1.duplicate | PGQLPLQMQQ | V | GMKREGNSNN | Site 556 |
| Ndar.paralog2 | ---------- | - | ---------- | |
| Ndar.paralog1 | ---------- | - | ---------- | |
| Cgla.paralog1 | QQQL------ | - | ---------- | |
| Xbla.paralog1.duplicate | QNQIRNQNIP | Q | QSQNSAANA- | Site 582 |
| Lelo.ancMcm1 | QQHAQLQHQQ | - | ---------- | |
| Xafr.paralog1 | ---------- | - | ---------- | |
| Xafr.paralog2 | ---------- | - | ---------- | |
| Ncas.paralog1 | ---------- | - | ---------- | |
| ABR.ancMcm1 | ---------- | - | ---------- |
Generated by PhyloBot at 12:11, January 19th 2021
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