Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 331 in Alignment 'muscle'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 331 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 331 in 'muscle'
to Sites in 'msaprobs'

What percentage of the residues at this site in muscle are inferred to be a single site (i.e. homologous) in the alignments produced by msaprobs? A value of 100% indicates that the existence of site 331 is reproduced using the msaprobs method. Values less than 100% indicate that msaprobs made different homology inferences for the residues at this site.


Species Residue at Site 331
in 'muscle'
msaprobs

The residue for every species at site 331 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Tdel.paralog2 ---------- - ----------  
Clus.ancMcm1 ---------- - ----------  
Tdel.paralog1 QQN------- - ----------  
Kpol.paralog2 ---------- - ----------  
Kpol.paralog1 QDL------- - ----------  
Tpha.paralog1 ---------- - ----------  
Tpha.paralog2 ---------- - ----------  
Klac.ancMcm1 PQQ------- - ----------  
Cgla.paralog1.duplicate ---------- - ----------  
Ncas.Paralog2 ---------- - ----------  
Kthe.ancMcm1 PPQ------- - ----------  
Scer.Paralog2 ---------- - ----------  
Kwal.ancMcm1 ---------- - ----------  
Xafr.paralog1.duplicate ---------- - ----------  
Scer.Paralog1 AGALKQEVKS Q LLGGANPNQN Site 542
Sbay.paralog1 PGALKQEVKS Q LL-GANPNQT Site 551
Ncas.paralog1.duplicate VTTDIHQENN M NLNGINSMNA Site 533
Lklu.ancMcm1 ---------- - ----------  
Calb.ancMcm1 ---------- - ----------  
Ecym.ancMcm1 ---------- - ----------  
Zrou.paralog2 ---------- - ----------  
Zrou.paralog1 PHELHA---- - ----------  
Xnag.paralog1 MQQVPQ---- - ----------  
Tpha.paralog1.duplicate PQQQ------ - ----------  
Xnag.paralog2 ---------- - ----------  
Species Residue at Site 331
in 'muscle'
msaprobs

The residue for every species at site 331 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Kpol.paralog1.duplicate NGQYNH---- - ----------  
Sbay.Paralog2 ---------- - ----------  
Ylip.ancMcm1 PGL------- - ----------  
Cgla.paralog2 ---------- - ----------  
Xbla.paralog1 IPTSVGEHLQ N QLQKTADNGI Site 503
Ndar.paralog1.duplicate PGQLPLQMQQ V GMKREGNSNN Site 556
Ndar.paralog2 ---------- - ----------  
Ndar.paralog1 ---------- - ----------  
Cgla.paralog1 QQQL------ - ----------  
Xbla.paralog1.duplicate QNQIRNQNIP Q QSQNSAANA- Site 582
Lelo.ancMcm1 QQHAQLQHQQ - ----------  
Xafr.paralog1 ---------- - ----------  
Xafr.paralog2 ---------- - ----------  
Ncas.paralog1 ---------- - ----------  
ABR.ancMcm1 ---------- - ----------  

Generated by PhyloBot at 12:11, January 19th 2021
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