Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 309 in Alignment 'muscle'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 309 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 309 in 'muscle'
to Sites in 'msaprobs'

What percentage of the residues at this site in muscle are inferred to be a single site (i.e. homologous) in the alignments produced by msaprobs? A value of 100% indicates that the existence of site 309 is reproduced using the msaprobs method. Values less than 100% indicate that msaprobs made different homology inferences for the residues at this site.


Species Residue at Site 309
in 'muscle'
msaprobs

The residue for every species at site 309 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Tdel.paralog2 ---------- - ----------  
Clus.ancMcm1 QAVPHP---- Q VPAQH----- Site 599
Tdel.paralog1 QIQQQQ---- Q QIQQQQQQQI Site 486
Kpol.paralog2 ---------- - ----------  
Kpol.paralog1 QQGQQS---- N GVLGDSQQDM Site 578
Tpha.paralog1 QMQAPQ---- Q QVQQQ----- Site 453
Tpha.paralog2 ---------- - ----------  
Klac.ancMcm1 TVPTSV---- Q LPGGGHSHGL Site 575
Cgla.paralog1.duplicate NNAPMD---- - ----------  
Ncas.Paralog2 ---------- - ----------  
Kthe.ancMcm1 LPSAHQ---- Q VPMAG----- Site 580
Scer.Paralog2 ---------- - ----------  
Kwal.ancMcm1 ---------- - ----------  
Xafr.paralog1.duplicate NLFGKN---- E DVKMNI---- Site 590
Scer.Paralog1 VLNAHA---- N SLGHLNQDQV Site 520
Sbay.paralog1 VLNAHA---- N SLGHMNQDQV Site 529
Ncas.paralog1.duplicate NIHNNI---- N GVPNNAENLV Site 511
Lklu.ancMcm1 GVAADP---- - ----------  
Calb.ancMcm1 NVMGAA---- G HAHHI----- Site 585
Ecym.ancMcm1 DASGNPNAVN V GVPSN----- Site 587
Zrou.paralog2 ---------- - ----------  
Zrou.paralog1 QMAGQP---- T HVPNTAGLGP Site 570
Xnag.paralog1 AMHAQQ---- Q QQLQQQHQQM Site 414
Tpha.paralog1.duplicate QMQQQP---- P QLQQHQQHPP Site 451
Xnag.paralog2 ---------- - ----------  
Species Residue at Site 309
in 'muscle'
msaprobs

The residue for every species at site 309 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Kpol.paralog1.duplicate LIPNIK---- Q DNDIDSRNIP Site 453
Sbay.Paralog2 ---------- - ----------  
Ylip.ancMcm1 VAGGEL---- P DQLVEDQLGG Site 619
Cgla.paralog2 ---------- - ----------  
Xbla.paralog1 QQMQHPAMGM N PQQGQQGQQG Site 481
Ndar.paralog1.duplicate AINSMK---- Q AIAGSTNAMV Site 534
Ndar.paralog2 ---------- - ----------  
Ndar.paralog1 GIISPD---- T DNIH------ Site 602
Cgla.paralog1 DLPHHL---- R QNAVHNQMLD Site 589
Xbla.paralog1.duplicate QQQQIP---- Q QIPQQIPQQL Site 558
Lelo.ancMcm1 QPPHLP---- H HVQHQAQQQA Site 562
Xafr.paralog1 QVQNDA---- V AQAQA----- Site 590
Xafr.paralog2 ---------- - ----------  
Ncas.paralog1 NMVNVQ---- N NNNVNI---- Site 590
ABR.ancMcm1 DVPGNP---- G PVDVGVPA-- Site 595

Generated by PhyloBot at 10:43, January 19th 2021
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