Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 301 in Alignment 'muscle'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 301 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 301 in 'muscle'
to Sites in 'msaprobs'

What percentage of the residues at this site in muscle are inferred to be a single site (i.e. homologous) in the alignments produced by msaprobs? A value of 100% indicates that the existence of site 301 is reproduced using the msaprobs method. Values less than 100% indicate that msaprobs made different homology inferences for the residues at this site.


Species Residue at Site 301
in 'muscle'
msaprobs

The residue for every species at site 301 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Tdel.paralog2 ---------- - ----------  
Clus.ancMcm1 QSPAQPQPQA V PHP----QVP Site 595
Tdel.paralog1 QQQIQQQQQI Q QQQ----QQI Site 482
Kpol.paralog2 ---------- - ----------  
Kpol.paralog1 GQQGQQQVQQ G QQS----NGV Site 574
Tpha.paralog1 GAPGPAVQQM Q APQ----QQV Site 449
Tpha.paralog2 ---------- - ----------  
Klac.ancMcm1 DVGGQPHSTV P TSV----QLP Site 569
Cgla.paralog1.duplicate NKQPHTQKNN A PMD------- Site 593
Ncas.Paralog2 ---------- - ----------  
Kthe.ancMcm1 ----DAAKLP S AHQ----QVP Site 576
Scer.Paralog2 ---------- - ----------  
Kwal.ancMcm1 ---------- - ----------  
Xafr.paralog1.duplicate ------SSNL F GKN----EDV Site 586
Scer.Paralog1 QQPQQQQQVL N AHA----NSL Site 516
Sbay.paralog1 QPQQQQQQVL N AHA----NSL Site 525
Ncas.paralog1.duplicate NSNMTSHNNI H NNI----NGV Site 507
Lklu.ancMcm1 TAAAAAAGGV A ADP------- Site 604
Calb.ancMcm1 SPAPATNPNV M GAA----GHA Site 581
Ecym.ancMcm1 VAGPNAVQDA S GNPNAVNVGV Site 579
Zrou.paralog2 ---------- - ----------  
Zrou.paralog1 ----AAAAQM A GQP----THV Site 566
Xnag.paralog1 VQQQGQQQAM H AQQ----QQQ Site 410
Tpha.paralog1.duplicate QQKQQQSPQM Q QQP----PQL Site 447
Xnag.paralog2 ---------- - ----------  
Species Residue at Site 301
in 'muscle'
msaprobs

The residue for every species at site 301 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Kpol.paralog1.duplicate QGHLQSNQLI P NIK----QDN Site 449
Sbay.Paralog2 ---------- - ----------  
Ylip.ancMcm1 ANGPGGSQVA G GEL----PDQ Site 615
Cgla.paralog2 ---------- - ----------  
Xbla.paralog1 QQQQQPQQQQ M QHPAMGMNPQ Site 473
Ndar.paralog1.duplicate NIGMDSMNAI N SMK----QAI Site 530
Ndar.paralog2 ---------- - ----------  
Ndar.paralog1 --GMDTRSGI I SPD----TDN Site 598
Cgla.paralog1 DLGSNSQTDL P HHL----RQN Site 585
Xbla.paralog1.duplicate QQQQQQQQQQ Q QIP----QQI Site 554
Lelo.ancMcm1 QQAPQALAQP P HLP----HHV Site 558
Xafr.paralog1 -----VQQQV Q NDA----VAQ Site 458
Xafr.paralog2 ---------- - ----------  
Ncas.paralog1 NIDPRNHDNM V NVQ----NNN Site 586
ABR.ancMcm1 VAGPNAVQDV P GNP----GPV Site 591

Generated by PhyloBot at 12:57, January 19th 2021
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