Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 297 in Alignment 'muscle'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 297 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 297 in 'muscle'
to Sites in 'msaprobs'

What percentage of the residues at this site in muscle are inferred to be a single site (i.e. homologous) in the alignments produced by msaprobs? A value of 100% indicates that the existence of site 297 is reproduced using the msaprobs method. Values less than 100% indicate that msaprobs made different homology inferences for the residues at this site.


Species Residue at Site 297
in 'muscle'
msaprobs

The residue for every species at site 297 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Tdel.paralog2 ---------- - ----------  
Clus.ancMcm1 ----QSPAQP Q PQAVPHP--- Site 591
Tdel.paralog1 SSEQQQQIQQ Q QQIQQQQ--- Site 478
Kpol.paralog2 ---------- - ----------  
Kpol.paralog1 VQQQGQQGQQ Q VQQGQQS--- Site 494
Tpha.paralog1 ----GAPGPA V QQMQAPQ--- Site 445
Tpha.paralog2 ---------- - ----------  
Klac.ancMcm1 DHGGDVGGQP H STVPTSV--- Site 565
Cgla.paralog1.duplicate IAEQNKQPHT Q KNNAPMD--- Site 589
Ncas.Paralog2 ---------- - ----------  
Kthe.ancMcm1 --------DA A KLPSAHQ--- Site 570
Scer.Paralog2 ---------- - ----------  
Kwal.ancMcm1 ---------- - ----------  
Xafr.paralog1.duplicate ---------- S SNLFGKN--- Site 582
Scer.Paralog1 QPQQQQPQQQ Q QVLNAHA--- Site 512
Sbay.paralog1 QQQQQPQQQQ Q QVLNAHA--- Site 521
Ncas.paralog1.duplicate NNNTNSNMTS H NNIHNNI--- Site 503
Lklu.ancMcm1 ADVTTAAAAA A GGVAADP--- Site 600
Calb.ancMcm1 ---QSPAPAT N PNVMGAA--- Site 577
Ecym.ancMcm1 SVGGVAGPNA V QDASGNPNAV Site 575
Zrou.paralog2 ---------- - ----------  
Zrou.paralog1 --------AA A AQMAGQP--- Site 562
Xnag.paralog1 KQQQVQQQGQ Q QAMHAQQ--- Site 406
Tpha.paralog1.duplicate QQDQQQKQQQ S PQMQQQP--- Site 443
Xnag.paralog2 ---------- - ----------  
Species Residue at Site 297
in 'muscle'
msaprobs

The residue for every species at site 297 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Kpol.paralog1.duplicate LIQQQGHLQS N QLIPNIK--- Site 445
Sbay.Paralog2 ---------- - ----------  
Ylip.ancMcm1 VNSQANGPGG S QVAGGEL--- Site 611
Cgla.paralog2 ---------- - ----------  
Xbla.paralog1 QQQQQQQQQP Q QQQMQHPAMG Site 383
Ndar.paralog1.duplicate SSMTNIGMDS M NAINSMK--- Site 526
Ndar.paralog2 ---------- - ----------  
Ndar.paralog1 ------GMDT R SGIISPD--- Site 594
Cgla.paralog1 -GNPDLGSNS Q TDLPHHL--- Site 581
Xbla.paralog1.duplicate PQQQQQQQQQ Q QQQQQIP--- Site 550
Lelo.ancMcm1 QQQQQQAPQA L AQPPHLP--- Site 554
Xafr.paralog1 ---------V Q QQVQNDA--- Site 454
Xafr.paralog2 ---------- - ----------  
Ncas.paralog1 VDNINIDPRN H DNMVNVQ--- Site 582
ABR.ancMcm1 SVGGVAGPNA V QDVPGNP--- Site 587

Generated by PhyloBot at 11:59, January 19th 2021
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