If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016
Overview | Alignments | Sites | Trees | Ancestors | Mutations
What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 297 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.
| Species | Residue at Site 297 in 'muscle' |
msaprobs
The residue for every species at site 297 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number. |
||
|---|---|---|---|---|
| Tdel.paralog2 | ---------- | - | ---------- | |
| Clus.ancMcm1 | ----QSPAQP | Q | PQAVPHP--- | Site 591 |
| Tdel.paralog1 | SSEQQQQIQQ | Q | QQIQQQQ--- | Site 478 |
| Kpol.paralog2 | ---------- | - | ---------- | |
| Kpol.paralog1 | VQQQGQQGQQ | Q | VQQGQQS--- | Site 494 |
| Tpha.paralog1 | ----GAPGPA | V | QQMQAPQ--- | Site 445 |
| Tpha.paralog2 | ---------- | - | ---------- | |
| Klac.ancMcm1 | DHGGDVGGQP | H | STVPTSV--- | Site 565 |
| Cgla.paralog1.duplicate | IAEQNKQPHT | Q | KNNAPMD--- | Site 589 |
| Ncas.Paralog2 | ---------- | - | ---------- | |
| Kthe.ancMcm1 | --------DA | A | KLPSAHQ--- | Site 570 |
| Scer.Paralog2 | ---------- | - | ---------- | |
| Kwal.ancMcm1 | ---------- | - | ---------- | |
| Xafr.paralog1.duplicate | ---------- | S | SNLFGKN--- | Site 582 |
| Scer.Paralog1 | QPQQQQPQQQ | Q | QVLNAHA--- | Site 512 |
| Sbay.paralog1 | QQQQQPQQQQ | Q | QVLNAHA--- | Site 521 |
| Ncas.paralog1.duplicate | NNNTNSNMTS | H | NNIHNNI--- | Site 503 |
| Lklu.ancMcm1 | ADVTTAAAAA | A | GGVAADP--- | Site 600 |
| Calb.ancMcm1 | ---QSPAPAT | N | PNVMGAA--- | Site 577 |
| Ecym.ancMcm1 | SVGGVAGPNA | V | QDASGNPNAV | Site 575 |
| Zrou.paralog2 | ---------- | - | ---------- | |
| Zrou.paralog1 | --------AA | A | AQMAGQP--- | Site 562 |
| Xnag.paralog1 | KQQQVQQQGQ | Q | QAMHAQQ--- | Site 406 |
| Tpha.paralog1.duplicate | QQDQQQKQQQ | S | PQMQQQP--- | Site 443 |
| Xnag.paralog2 | ---------- | - | ---------- | Species | Residue at Site 297 in 'muscle' |
msaprobs
The residue for every species at site 297 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number. |
| Kpol.paralog1.duplicate | LIQQQGHLQS | N | QLIPNIK--- | Site 445 |
| Sbay.Paralog2 | ---------- | - | ---------- | |
| Ylip.ancMcm1 | VNSQANGPGG | S | QVAGGEL--- | Site 611 |
| Cgla.paralog2 | ---------- | - | ---------- | |
| Xbla.paralog1 | QQQQQQQQQP | Q | QQQMQHPAMG | Site 383 |
| Ndar.paralog1.duplicate | SSMTNIGMDS | M | NAINSMK--- | Site 526 |
| Ndar.paralog2 | ---------- | - | ---------- | |
| Ndar.paralog1 | ------GMDT | R | SGIISPD--- | Site 594 |
| Cgla.paralog1 | -GNPDLGSNS | Q | TDLPHHL--- | Site 581 |
| Xbla.paralog1.duplicate | PQQQQQQQQQ | Q | QQQQQIP--- | Site 550 |
| Lelo.ancMcm1 | QQQQQQAPQA | L | AQPPHLP--- | Site 554 |
| Xafr.paralog1 | ---------V | Q | QQVQNDA--- | Site 454 |
| Xafr.paralog2 | ---------- | - | ---------- | |
| Ncas.paralog1 | VDNINIDPRN | H | DNMVNVQ--- | Site 582 |
| ABR.ancMcm1 | SVGGVAGPNA | V | QDVPGNP--- | Site 587 |
Generated by PhyloBot at 11:59, January 19th 2021
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