Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 290 in Alignment 'muscle'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 290 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 290 in 'muscle'
to Sites in 'msaprobs'

What percentage of the residues at this site in muscle are inferred to be a single site (i.e. homologous) in the alignments produced by msaprobs? A value of 100% indicates that the existence of site 290 is reproduced using the msaprobs method. Values less than 100% indicate that msaprobs made different homology inferences for the residues at this site.


Species Residue at Site 290
in 'muscle'
msaprobs

The residue for every species at site 290 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Tdel.paralog2 ---------- - ----------  
Clus.ancMcm1 ---------- - QSPAQPQPQA  
Tdel.paralog1 DSSNQVSSSE Q QQQIQQQQQI Site 471
Kpol.paralog2 ---------- - ----------  
Kpol.paralog1 QQQQQQQVQQ Q GQQGQQQVQQ Site 487
Tpha.paralog1 ---------- - GAPGPAVQQM  
Tpha.paralog2 ---------- - ----------  
Klac.ancMcm1 ----VQHDHG G DVGGQPHSTV Site 558
Cgla.paralog1.duplicate QNQHQEQIAE Q NKQPHTQKNN Site 582
Ncas.Paralog2 ---------- - ----------  
Kthe.ancMcm1 ---------- - ----DAAKLP  
Scer.Paralog2 ---------- - ----------  
Kwal.ancMcm1 ---------- - ----------  
Xafr.paralog1.duplicate ---------- - ------SSNL  
Scer.Paralog1 ---MQRQQPQ Q QQPQQQQQVL Site 505
Sbay.paralog1 QRQQQQQQQQ Q QPQQQQQQVL Site 514
Ncas.paralog1.duplicate NNNNNNNNNN T NSNMTSHNNI Site 496
Lklu.ancMcm1 -------ADV T TAAAAAAGGV Site 593
Calb.ancMcm1 ---------- Q SPAPATNPNV Site 570
Ecym.ancMcm1 ------VSVG G VAGPNAVQDA Site 492
Zrou.paralog2 ---------- - ----------  
Zrou.paralog1 ---------- - ----AAAAQM  
Xnag.paralog1 -QQQQVQKQQ Q VQQQGQQQAM Site 399
Tpha.paralog1.duplicate QQQQQQLQQD Q QQKQQQSPQM Site 436
Xnag.paralog2 ---------- - ----------  
Species Residue at Site 290
in 'muscle'
msaprobs

The residue for every species at site 290 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Kpol.paralog1.duplicate NPNNAGSLIQ Q QGHLQSNQLI Site 438
Sbay.Paralog2 ---------- - ----------  
Ylip.ancMcm1 -QRHGSHVNS Q ANGPGGSQVA Site 604
Cgla.paralog2 ---------- - ----------  
Xbla.paralog1 QQQLATLQQQ Q QQQQQPQQQQ Site 376
Ndar.paralog1.duplicate SARHNSTSSM T NIGMDSMNAI Site 519
Ndar.paralog2 ---------- - ----------  
Ndar.paralog1 ---------- - --GMDTRSGI  
Cgla.paralog1 --------GN P DLGSNSQTDL Site 574
Xbla.paralog1.duplicate DQTNQQIPQQ Q QQQQQQQQQQ Site 543
Lelo.ancMcm1 SSSTQQQQQQ Q QQAPQALAQP Site 547
Xafr.paralog1 ---------- - -----VQQQV  
Xafr.paralog2 ---------- - ----------  
Ncas.paralog1 NNNRGGSVDN I NIDPRNHDNM Site 575
ABR.ancMcm1 ------VSVG G VAGPNAVQDV Site 580

Generated by PhyloBot at 11:03, January 19th 2021
Questions/Comments? help@phylobot.com