If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016
Overview | Alignments | Sites | Trees | Ancestors | Mutations
What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 290 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.
| Species | Residue at Site 290 in 'muscle' |
msaprobs
The residue for every species at site 290 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number. |
||
|---|---|---|---|---|
| Tdel.paralog2 | ---------- | - | ---------- | |
| Clus.ancMcm1 | ---------- | - | QSPAQPQPQA | |
| Tdel.paralog1 | DSSNQVSSSE | Q | QQQIQQQQQI | Site 471 |
| Kpol.paralog2 | ---------- | - | ---------- | |
| Kpol.paralog1 | QQQQQQQVQQ | Q | GQQGQQQVQQ | Site 487 |
| Tpha.paralog1 | ---------- | - | GAPGPAVQQM | |
| Tpha.paralog2 | ---------- | - | ---------- | |
| Klac.ancMcm1 | ----VQHDHG | G | DVGGQPHSTV | Site 558 |
| Cgla.paralog1.duplicate | QNQHQEQIAE | Q | NKQPHTQKNN | Site 582 |
| Ncas.Paralog2 | ---------- | - | ---------- | |
| Kthe.ancMcm1 | ---------- | - | ----DAAKLP | |
| Scer.Paralog2 | ---------- | - | ---------- | |
| Kwal.ancMcm1 | ---------- | - | ---------- | |
| Xafr.paralog1.duplicate | ---------- | - | ------SSNL | |
| Scer.Paralog1 | ---MQRQQPQ | Q | QQPQQQQQVL | Site 505 |
| Sbay.paralog1 | QRQQQQQQQQ | Q | QPQQQQQQVL | Site 514 |
| Ncas.paralog1.duplicate | NNNNNNNNNN | T | NSNMTSHNNI | Site 496 |
| Lklu.ancMcm1 | -------ADV | T | TAAAAAAGGV | Site 593 |
| Calb.ancMcm1 | ---------- | Q | SPAPATNPNV | Site 570 |
| Ecym.ancMcm1 | ------VSVG | G | VAGPNAVQDA | Site 492 |
| Zrou.paralog2 | ---------- | - | ---------- | |
| Zrou.paralog1 | ---------- | - | ----AAAAQM | |
| Xnag.paralog1 | -QQQQVQKQQ | Q | VQQQGQQQAM | Site 399 |
| Tpha.paralog1.duplicate | QQQQQQLQQD | Q | QQKQQQSPQM | Site 436 |
| Xnag.paralog2 | ---------- | - | ---------- | Species | Residue at Site 290 in 'muscle' |
msaprobs
The residue for every species at site 290 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number. |
| Kpol.paralog1.duplicate | NPNNAGSLIQ | Q | QGHLQSNQLI | Site 438 |
| Sbay.Paralog2 | ---------- | - | ---------- | |
| Ylip.ancMcm1 | -QRHGSHVNS | Q | ANGPGGSQVA | Site 604 |
| Cgla.paralog2 | ---------- | - | ---------- | |
| Xbla.paralog1 | QQQLATLQQQ | Q | QQQQQPQQQQ | Site 376 |
| Ndar.paralog1.duplicate | SARHNSTSSM | T | NIGMDSMNAI | Site 519 |
| Ndar.paralog2 | ---------- | - | ---------- | |
| Ndar.paralog1 | ---------- | - | --GMDTRSGI | |
| Cgla.paralog1 | --------GN | P | DLGSNSQTDL | Site 574 |
| Xbla.paralog1.duplicate | DQTNQQIPQQ | Q | QQQQQQQQQQ | Site 543 |
| Lelo.ancMcm1 | SSSTQQQQQQ | Q | QQAPQALAQP | Site 547 |
| Xafr.paralog1 | ---------- | - | -----VQQQV | |
| Xafr.paralog2 | ---------- | - | ---------- | |
| Ncas.paralog1 | NNNRGGSVDN | I | NIDPRNHDNM | Site 575 |
| ABR.ancMcm1 | ------VSVG | G | VAGPNAVQDV | Site 580 |
Generated by PhyloBot at 11:03, January 19th 2021
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