Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 288 in Alignment 'muscle'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 288 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 288 in 'muscle'
to Sites in 'msaprobs'

What percentage of the residues at this site in muscle are inferred to be a single site (i.e. homologous) in the alignments produced by msaprobs? A value of 100% indicates that the existence of site 288 is reproduced using the msaprobs method. Values less than 100% indicate that msaprobs made different homology inferences for the residues at this site.


Species Residue at Site 288
in 'muscle'
msaprobs

The residue for every species at site 288 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Tdel.paralog2 ---------- - ----------  
Clus.ancMcm1 ---------- - --QSPAQPQP  
Tdel.paralog1 --DSSNQVSS S EQQQQIQQQQ Site 469
Kpol.paralog2 ---------- - ----------  
Kpol.paralog1 QQQQQQQQQV Q QQGQQGQQQV Site 485
Tpha.paralog1 ---------- - --GAPGPAVQ  
Tpha.paralog2 ---------- - ----------  
Klac.ancMcm1 ------VQHD H GGDVGGQPHS Site 556
Cgla.paralog1.duplicate -PQNQHQEQI A EQNKQPHTQK Site 580
Ncas.Paralog2 ---------- - ----------  
Kthe.ancMcm1 ---------- - ------DAAK  
Scer.Paralog2 ---------- - ----------  
Kwal.ancMcm1 ---------- - ----------  
Xafr.paralog1.duplicate ---------- - --------SS  
Scer.Paralog1 -----MQRQQ P QQQQPQQQQQ Site 503
Sbay.paralog1 DMQRQQQQQQ Q QQQPQQQQQQ Site 512
Ncas.paralog1.duplicate EINNNNNNNN N NTNSNMTSHN Site 494
Lklu.ancMcm1 ---------A D VTTAAAAAAG Site 591
Calb.ancMcm1 ---------- - -QSPAPATNP  
Ecym.ancMcm1 --------VS V GGVAGPNAVQ Site 490
Zrou.paralog2 ---------- - ----------  
Zrou.paralog1 ---------- - ------AAAA  
Xnag.paralog1 ---QQQQVQK Q QQVQQQGQQQ Site 397
Tpha.paralog1.duplicate QQQQQQQQLQ Q DQQQKQQQSP Site 434
Xnag.paralog2 ---------- - ----------  
Species Residue at Site 288
in 'muscle'
msaprobs

The residue for every species at site 288 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Kpol.paralog1.duplicate NSNPNNAGSL I QQQGHLQSNQ Site 436
Sbay.Paralog2 ---------- - ----------  
Ylip.ancMcm1 ---QRHGSHV N SQANGPGGSQ Site 602
Cgla.paralog2 ---------- - ----------  
Xbla.paralog1 TQQQQLATLQ Q QQQQQQQPQQ Site 374
Ndar.paralog1.duplicate DPSARHNSTS S MTNIGMDSMN Site 517
Ndar.paralog2 ---------- - ----------  
Ndar.paralog1 ---------- - ----GMDTRS  
Cgla.paralog1 ---------- G NPDLGSNSQT Site 570
Xbla.paralog1.duplicate EYDQTNQQIP Q QQQQQQQQQQ Site 541
Lelo.ancMcm1 AVSSSTQQQQ Q QQQQAPQALA Site 545
Xafr.paralog1 ---------- - -------VQQ  
Xafr.paralog2 ---------- - ----------  
Ncas.paralog1 GENNNRGGSV D NINIDPRNHD Site 573
ABR.ancMcm1 --------VS V GGVAGPNAVQ Site 578

Generated by PhyloBot at 11:37, January 19th 2021
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