Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 279 in Alignment 'muscle'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 279 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 279 in 'muscle'
to Sites in 'msaprobs'

What percentage of the residues at this site in muscle are inferred to be a single site (i.e. homologous) in the alignments produced by msaprobs? A value of 100% indicates that the existence of site 279 is reproduced using the msaprobs method. Values less than 100% indicate that msaprobs made different homology inferences for the residues at this site.


Species Residue at Site 279
in 'muscle'
msaprobs

The residue for every species at site 279 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Tdel.paralog2 ---------- - ----------  
Clus.ancMcm1 ---------- - ----------  
Tdel.paralog1 ---------- - DSSNQVSSSE  
Kpol.paralog2 ---------- - ----------  
Kpol.paralog1 --------QQ Q QQQQQQQVQQ Site 476
Tpha.paralog1 ---------- - ----------  
Tpha.paralog2 ---------- - ----------  
Klac.ancMcm1 ---------- - ----VQHDHG  
Cgla.paralog1.duplicate ---------- P QNQHQEQIAE Site 569
Ncas.Paralog2 ---------- - ----------  
Kthe.ancMcm1 -------DD- - ----------  
Scer.Paralog2 ---------- - ----------  
Kwal.ancMcm1 ---------- - ----------  
Xafr.paralog1.duplicate ---------- - ----------  
Scer.Paralog1 ---------- - ---MQRQQPQ  
Sbay.paralog1 -------GND M QRQQQQQQQQ Site 503
Ncas.paralog1.duplicate QTNINDENDE I NNNNNNNNNN Site 485
Lklu.ancMcm1 ---------- - -------ADV  
Calb.ancMcm1 ---------- - ----------  
Ecym.ancMcm1 ---------- - ------VSVG  
Zrou.paralog2 ---------- - ----------  
Zrou.paralog1 ---------- - ----------  
Xnag.paralog1 ---------- - -QQQQVQKQQ  
Tpha.paralog1.duplicate -AGSLIQQQQ Q QQQQQQLQQD Site 425
Xnag.paralog2 ---------- - ----------  
Species Residue at Site 279
in 'muscle'
msaprobs

The residue for every species at site 279 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Kpol.paralog1.duplicate ISTNNNENVN S NPNNAGSLIQ Site 427
Sbay.Paralog2 ---------- - ----------  
Ylip.ancMcm1 ---------- - -QRHGSHVNS  
Cgla.paralog2 ---------- - ----------  
Xbla.paralog1 QMGQITNGMT Q QQQLATLQQQ Site 365
Ndar.paralog1.duplicate ILGSSITEQD P SARHNSTSSM Site 508
Ndar.paralog2 ---------- - ----------  
Ndar.paralog1 ---------- - ----------  
Cgla.paralog1 ---------- - --------GN  
Xbla.paralog1.duplicate QPDNAMMKNE Y DQTNQQIPQQ Site 532
Lelo.ancMcm1 -------PNA V SSSTQQQQQQ Site 536
Xafr.paralog1 ---------- - ----------  
Xafr.paralog2 ---------- - ----------  
Ncas.paralog1 --------AG E NNNRGGSVDN Site 478
ABR.ancMcm1 ---------- - ------VSVG  

Generated by PhyloBot at 11:15, January 19th 2021
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