Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 274 in Alignment 'muscle'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 274 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 274 in 'muscle'
to Sites in 'msaprobs'

What percentage of the residues at this site in muscle are inferred to be a single site (i.e. homologous) in the alignments produced by msaprobs? A value of 100% indicates that the existence of site 274 is reproduced using the msaprobs method. Values less than 100% indicate that msaprobs made different homology inferences for the residues at this site.


Species Residue at Site 274
in 'muscle'
msaprobs

The residue for every species at site 274 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Tdel.paralog2 ---------- - ----------  
Clus.ancMcm1 ---------- - ----------  
Tdel.paralog1 ---------- - -----DSSNQ  
Kpol.paralog2 ---------- - ----------  
Kpol.paralog1 ---------- - --QQQQQQQQ  
Tpha.paralog1 ---------- - ----------  
Tpha.paralog2 ---------- - ----------  
Klac.ancMcm1 ---------- - ---------V  
Cgla.paralog1.duplicate ---------- - ----PQNQHQ  
Ncas.Paralog2 ---------- - ----------  
Kthe.ancMcm1 ---------- - -DD-------  
Scer.Paralog2 ---------- - ----------  
Kwal.ancMcm1 ---------- - ----------  
Xafr.paralog1.duplicate ---------- - ----------  
Scer.Paralog1 ---------- - --------MQ  
Sbay.paralog1 ---------- - -GNDMQRQQQ  
Ncas.paralog1.duplicate ----VQTNIN D ENDEINNNNN Site 480
Lklu.ancMcm1 ---------- - ----------  
Calb.ancMcm1 ---------- - ----------  
Ecym.ancMcm1 ---------- - ----------  
Zrou.paralog2 ---------- - ----------  
Zrou.paralog1 ---------- - ----------  
Xnag.paralog1 ---------- - ------QQQQ  
Tpha.paralog1.duplicate ------AGSL I QQQQQQQQQQ Site 420
Xnag.paralog2 ---------- - ----------  
Species Residue at Site 274
in 'muscle'
msaprobs

The residue for every species at site 274 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Kpol.paralog1.duplicate NNSDNISTNN N ENVNSNPNNA Site 422
Sbay.Paralog2 ---------- - ----------  
Ylip.ancMcm1 ---------- - ------QRHG  
Cgla.paralog2 ---------- - ----------  
Xbla.paralog1 ANEQAQMGQI T NGMTQQQQLA Site 360
Ndar.paralog1.duplicate NQGAEILGSS I TEQDPSARHN Site 503
Ndar.paralog2 ---------- - ----------  
Ndar.paralog1 ---------- - ----------  
Cgla.paralog1 ---------- - ----------  
Xbla.paralog1.duplicate QLTNGQPDNA M MKNEYDQTNQ Site 527
Lelo.ancMcm1 ---------- - -PNAVSSSTQ  
Xafr.paralog1 ---------- - ----------  
Xafr.paralog2 ---------- - ----------  
Ncas.paralog1 ---------- - --AGENNNRG  
ABR.ancMcm1 ---------- - ----------  

Generated by PhyloBot at 11:46, January 19th 2021
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