Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 259 in Alignment 'muscle'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 259 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 259 in 'muscle'
to Sites in 'msaprobs'

What percentage of the residues at this site in muscle are inferred to be a single site (i.e. homologous) in the alignments produced by msaprobs? A value of 100% indicates that the existence of site 259 is reproduced using the msaprobs method. Values less than 100% indicate that msaprobs made different homology inferences for the residues at this site.


Species Residue at Site 259
in 'muscle'
msaprobs

The residue for every species at site 259 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Tdel.paralog2 -------GET T ---------- Site 706
Clus.ancMcm1 SDGNS--QDS P D--------- Site 484
Tdel.paralog1 EDARE--GAE E N--------- Site 389
Kpol.paralog2 ---------- - ----------  
Kpol.paralog1 DDQQQ--PQQ G Q--------- Site 472
Tpha.paralog1 EMEHD--NDA E A--------- Site 437
Tpha.paralog2 ---------- - ----------  
Klac.ancMcm1 EDEDE--DDE H N--------- Site 484
Cgla.paralog1.duplicate EEFDTSMQQG Q Q--------- Site 567
Ncas.Paralog2 ---------- - ----------  
Kthe.ancMcm1 EEDDD--EDA D D--------- Site 386
Scer.Paralog2 ---------- - ----------  
Kwal.ancMcm1 ---------- - ----------  
Xafr.paralog1.duplicate SNLNK--SNF S D--------- Site 484
Scer.Paralog1 DDDDDDDDDG N D--------- Site 496
Sbay.paralog1 DDDDE--EDD D D--------- Site 484
Ncas.paralog1.duplicate DEDGE--GDD N N-------VQ Site 386
Lklu.ancMcm1 DEEEEAKNED K P--------- Site 588
Calb.ancMcm1 SDGNT--GDS P D--------- Site 484
Ecym.ancMcm1 DDEEIKDEDK P D--------- Site 486
Zrou.paralog2 ---------- - ----------  
Zrou.paralog1 EAPEDPNGAA A A--------- Site 558
Xnag.paralog1 EADDE--EAQ R Q--------- Site 386
Tpha.paralog1.duplicate ETNKH--ENG N N--------- Site 414
Xnag.paralog2 ---------- - ----------  
Species Residue at Site 259
in 'muscle'
msaprobs

The residue for every species at site 259 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Kpol.paralog1.duplicate NDHQH--INA S NTNNNNSDNI Site 386
Sbay.Paralog2 ---------- - ----------  
Ylip.ancMcm1 DARQQ--QQQ H Q--------- Site 593
Cgla.paralog2 ---------- - ----------  
Xbla.paralog1 NNNND--GEQ Q NVIQANEQAQ Site 345
Ndar.paralog1.duplicate EEGEE--EDN N DHITNQGAEI Site 386
Ndar.paralog2 NPES------ - ----------  
Ndar.paralog1 DEDPE--NEG T N--------- Site 460
Cgla.paralog1 QDEDH--GDT Q N--------- Site 484
Xbla.paralog1.duplicate AASGDMGPED S KQPQQLTNGQ Site 512
Lelo.ancMcm1 SDGAE--GES P E--------- Site 484
Xafr.paralog1 DQQVQ--QQQ Q Q--------- Site 451
Xafr.paralog2 ---------- - ----------  
Ncas.paralog1 EGDEE--EDV D D--------- Site 386
ABR.ancMcm1 DEVKD--EDK P D--------- Site 486

Generated by PhyloBot at 11:49, January 19th 2021
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