If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016
Overview | Alignments | Sites | Trees | Ancestors | Mutations
What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 259 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.
| Species | Residue at Site 259 in 'muscle' |
msaprobs
The residue for every species at site 259 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number. |
||
|---|---|---|---|---|
| Tdel.paralog2 | -------GET | T | ---------- | Site 706 |
| Clus.ancMcm1 | SDGNS--QDS | P | D--------- | Site 484 |
| Tdel.paralog1 | EDARE--GAE | E | N--------- | Site 389 |
| Kpol.paralog2 | ---------- | - | ---------- | |
| Kpol.paralog1 | DDQQQ--PQQ | G | Q--------- | Site 472 |
| Tpha.paralog1 | EMEHD--NDA | E | A--------- | Site 437 |
| Tpha.paralog2 | ---------- | - | ---------- | |
| Klac.ancMcm1 | EDEDE--DDE | H | N--------- | Site 484 |
| Cgla.paralog1.duplicate | EEFDTSMQQG | Q | Q--------- | Site 567 |
| Ncas.Paralog2 | ---------- | - | ---------- | |
| Kthe.ancMcm1 | EEDDD--EDA | D | D--------- | Site 386 |
| Scer.Paralog2 | ---------- | - | ---------- | |
| Kwal.ancMcm1 | ---------- | - | ---------- | |
| Xafr.paralog1.duplicate | SNLNK--SNF | S | D--------- | Site 484 |
| Scer.Paralog1 | DDDDDDDDDG | N | D--------- | Site 496 |
| Sbay.paralog1 | DDDDE--EDD | D | D--------- | Site 484 |
| Ncas.paralog1.duplicate | DEDGE--GDD | N | N-------VQ | Site 386 |
| Lklu.ancMcm1 | DEEEEAKNED | K | P--------- | Site 588 |
| Calb.ancMcm1 | SDGNT--GDS | P | D--------- | Site 484 |
| Ecym.ancMcm1 | DDEEIKDEDK | P | D--------- | Site 486 |
| Zrou.paralog2 | ---------- | - | ---------- | |
| Zrou.paralog1 | EAPEDPNGAA | A | A--------- | Site 558 |
| Xnag.paralog1 | EADDE--EAQ | R | Q--------- | Site 386 |
| Tpha.paralog1.duplicate | ETNKH--ENG | N | N--------- | Site 414 |
| Xnag.paralog2 | ---------- | - | ---------- | Species | Residue at Site 259 in 'muscle' |
msaprobs
The residue for every species at site 259 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number. |
| Kpol.paralog1.duplicate | NDHQH--INA | S | NTNNNNSDNI | Site 386 |
| Sbay.Paralog2 | ---------- | - | ---------- | |
| Ylip.ancMcm1 | DARQQ--QQQ | H | Q--------- | Site 593 |
| Cgla.paralog2 | ---------- | - | ---------- | |
| Xbla.paralog1 | NNNND--GEQ | Q | NVIQANEQAQ | Site 345 |
| Ndar.paralog1.duplicate | EEGEE--EDN | N | DHITNQGAEI | Site 386 |
| Ndar.paralog2 | NPES------ | - | ---------- | |
| Ndar.paralog1 | DEDPE--NEG | T | N--------- | Site 460 |
| Cgla.paralog1 | QDEDH--GDT | Q | N--------- | Site 484 |
| Xbla.paralog1.duplicate | AASGDMGPED | S | KQPQQLTNGQ | Site 512 |
| Lelo.ancMcm1 | SDGAE--GES | P | E--------- | Site 484 |
| Xafr.paralog1 | DQQVQ--QQQ | Q | Q--------- | Site 451 |
| Xafr.paralog2 | ---------- | - | ---------- | |
| Ncas.paralog1 | EGDEE--EDV | D | D--------- | Site 386 |
| ABR.ancMcm1 | DEVKD--EDK | P | D--------- | Site 486 |
Generated by PhyloBot at 11:49, January 19th 2021
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