Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 123 in Alignment 'muscle'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 123 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 123 in 'muscle'
to Sites in 'msaprobs'

What percentage of the residues at this site in muscle are inferred to be a single site (i.e. homologous) in the alignments produced by msaprobs? A value of 100% indicates that the existence of site 123 is reproduced using the msaprobs method. Values less than 100% indicate that msaprobs made different homology inferences for the residues at this site.


Species Residue at Site 123
in 'muscle'
msaprobs

The residue for every species at site 123 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Tdel.paralog2 PSTMDQS--- - NSATPVS---  
Clus.ancMcm1 SGVGGDD--- - DEDDEPS---  
Tdel.paralog1 ---------- - -EDTGSR---  
Kpol.paralog2 ENGARPY--- - PTYIDDP---  
Kpol.paralog1 ----DDS--- - TGNG------  
Tpha.paralog1 ----LED--- - DEDATGK---  
Tpha.paralog2 ---------- - ----------  
Klac.ancMcm1 ----DDS--- - V---------  
Cgla.paralog1.duplicate ---------- - ---TSTP---  
Ncas.Paralog2 EEEEGDE--- - EEDLELEEET  
Kthe.ancMcm1 ----DKE--- - LSAGPQP---  
Scer.Paralog2 EEDDDDK--- - FSVSTST---  
Kwal.ancMcm1 ----EKE--- - LSVGAQS---  
Xafr.paralog1.duplicate ---------- - NGNTSQD---  
Scer.Paralog1 ---------- - ---TPTN---  
Sbay.paralog1 ---------- - ---TPTN---  
Ncas.paralog1.duplicate IIINNQE--- - AESSSTS---  
Lklu.ancMcm1 ---------- - PGAGTSQ---  
Calb.ancMcm1 APVDDDD--- - DDDGTSQ---  
Ecym.ancMcm1 ---------- - ----------  
Zrou.paralog2 SVDTQEP--- - DDDEDEE---  
Zrou.paralog1 ----ED---- - ---NSSR---  
Xnag.paralog1 GGDPDTP--- - TGSGSGG---  
Tpha.paralog1.duplicate KTDSKDS--- - SLLSPSS---  
Xnag.paralog2 DDEDEDD--- - DAQEDED---  
Species Residue at Site 123
in 'muscle'
msaprobs

The residue for every species at site 123 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Kpol.paralog1.duplicate ----GDE--- - NTTVNSN---  
Sbay.Paralog2 DKSSVEP--- - STPTPTT---  
Ylip.ancMcm1 QGGPGDV--- - GSDDDDA---  
Cgla.paralog2 NENENDD--- - EDEEVST---  
Xbla.paralog1 PGNQDVV--- - ATAGNST---  
Ndar.paralog1.duplicate ---------- - TPEGSQQ---  
Ndar.paralog2 EDVAIDSESY R ESSASVPATS Site 136
Ndar.paralog1 ---------- - ---TPIE---  
Cgla.paralog1 SAEPKSN--- - NGTSFEN---  
Xbla.paralog1.duplicate SSTTLTN--- - NPSAASA---  
Lelo.ancMcm1 PMDDDDD--- - DESGAAS---  
Xafr.paralog1 SHIEEDP--- - SLSPSTN---  
Xafr.paralog2 DSLVEGT--- - NNETSIP---  
Ncas.paralog1 ----KDD--- - SIVADSP---  
ABR.ancMcm1 ---------- - ----------  

Generated by PhyloBot at 11:01, January 19th 2021
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