If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016
Overview | Alignments | Sites | Trees | Ancestors | Mutations
What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 115 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.
| Species | Residue at Site 115 in 'muscle' |
msaprobs
The residue for every species at site 115 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number. |
||
|---|---|---|---|---|
| Tdel.paralog2 | MMRAQDEDPS | T | MDQS----NS | Site 219 |
| Clus.ancMcm1 | AQFSRGSVSG | V | GGDD----DE | Site 122 |
| Tdel.paralog1 | IEDV------ | - | ---------E | |
| Kpol.paralog2 | VESTEAHLEN | G | ARPY----PT | Site 222 |
| Kpol.paralog1 | VDDI------ | - | -DDS----TG | |
| Tpha.paralog1 | IDDDASH--- | - | -LED----DE | |
| Tpha.paralog2 | TDHK------ | - | ---------- | |
| Klac.ancMcm1 | SEVK------ | - | -DDS----V- | |
| Cgla.paralog1.duplicate | IDED------ | - | ---------- | |
| Ncas.Paralog2 | IDVGEDDEEE | E | EGDE----EE | Site 136 |
| Kthe.ancMcm1 | TGVD------ | - | -DKE----LS | |
| Scer.Paralog2 | QDQEGDFDEE | D | DDDK----FS | Site 134 |
| Kwal.ancMcm1 | TGAD------ | - | -EKE----LS | |
| Xafr.paralog1.duplicate | KEEN------ | - | --------NG | |
| Scer.Paralog1 | IEEG------ | - | ---------- | |
| Sbay.paralog1 | IEEG------ | - | ---------- | |
| Ncas.paralog1.duplicate | TESGVQDQII | I | NNQE----AE | Site 218 |
| Lklu.ancMcm1 | TEEK------ | - | --------PG | |
| Calb.ancMcm1 | SNNNADVSAP | V | DDDD----DD | Site 123 |
| Ecym.ancMcm1 | TEKQ------ | - | ---------- | |
| Zrou.paralog2 | EERNRTPASV | D | TQEP----DD | Site 219 |
| Zrou.paralog1 | IDDV------ | - | -ED------- | |
| Xnag.paralog1 | ANSAGNNVGG | D | PDTP----TG | Site 222 |
| Tpha.paralog1.duplicate | SEDHKLDLKT | D | SKDS----SL | Site 219 |
| Xnag.paralog2 | EEEEDEEEDD | E | DEDD----DA | Site 205 | Species | Residue at Site 115 in 'muscle' |
msaprobs
The residue for every species at site 115 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number. |
| Kpol.paralog1.duplicate | SNDS------ | - | -GDE----NT | |
| Sbay.Paralog2 | DDEEDDDEDK | S | SVEP----ST | Site 139 |
| Ylip.ancMcm1 | NVLKRESSQG | G | PGDV----GS | Site 216 |
| Cgla.paralog2 | IENEQENENE | N | ENDD----ED | Site 151 |
| Xbla.paralog1 | PTSDSVNTPG | N | QDVV----AT | Site 205 |
| Ndar.paralog1.duplicate | VEN------- | - | --------TP | |
| Ndar.paralog2 | EEEEDEDEED | V | AIDSESYRES | Site 128 |
| Ndar.paralog1 | TNSK------ | - | ---------- | |
| Cgla.paralog1 | SNSVLNEMSA | E | PKSN----NG | Site 153 |
| Xbla.paralog1.duplicate | SSTNTDPNSS | T | TLTN----NP | Site 218 |
| Lelo.ancMcm1 | ISSSLSNPPM | D | DDDD----DE | Site 131 |
| Xafr.paralog1 | QDIKESQTSH | I | EEDP----SL | Site 220 |
| Xafr.paralog2 | SNNNNVNKDS | L | VEGT----NN | Site 140 |
| Ncas.paralog1 | EQNIE----- | - | -KDD----SI | |
| ABR.ancMcm1 | AEKA------ | - | ---------- |
Generated by PhyloBot at 12:40, January 19th 2021
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