Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 115 in Alignment 'muscle'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 115 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 115 in 'muscle'
to Sites in 'msaprobs'

What percentage of the residues at this site in muscle are inferred to be a single site (i.e. homologous) in the alignments produced by msaprobs? A value of 100% indicates that the existence of site 115 is reproduced using the msaprobs method. Values less than 100% indicate that msaprobs made different homology inferences for the residues at this site.


Species Residue at Site 115
in 'muscle'
msaprobs

The residue for every species at site 115 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Tdel.paralog2 MMRAQDEDPS T MDQS----NS Site 219
Clus.ancMcm1 AQFSRGSVSG V GGDD----DE Site 122
Tdel.paralog1 IEDV------ - ---------E  
Kpol.paralog2 VESTEAHLEN G ARPY----PT Site 222
Kpol.paralog1 VDDI------ - -DDS----TG  
Tpha.paralog1 IDDDASH--- - -LED----DE  
Tpha.paralog2 TDHK------ - ----------  
Klac.ancMcm1 SEVK------ - -DDS----V-  
Cgla.paralog1.duplicate IDED------ - ----------  
Ncas.Paralog2 IDVGEDDEEE E EGDE----EE Site 136
Kthe.ancMcm1 TGVD------ - -DKE----LS  
Scer.Paralog2 QDQEGDFDEE D DDDK----FS Site 134
Kwal.ancMcm1 TGAD------ - -EKE----LS  
Xafr.paralog1.duplicate KEEN------ - --------NG  
Scer.Paralog1 IEEG------ - ----------  
Sbay.paralog1 IEEG------ - ----------  
Ncas.paralog1.duplicate TESGVQDQII I NNQE----AE Site 218
Lklu.ancMcm1 TEEK------ - --------PG  
Calb.ancMcm1 SNNNADVSAP V DDDD----DD Site 123
Ecym.ancMcm1 TEKQ------ - ----------  
Zrou.paralog2 EERNRTPASV D TQEP----DD Site 219
Zrou.paralog1 IDDV------ - -ED-------  
Xnag.paralog1 ANSAGNNVGG D PDTP----TG Site 222
Tpha.paralog1.duplicate SEDHKLDLKT D SKDS----SL Site 219
Xnag.paralog2 EEEEDEEEDD E DEDD----DA Site 205
Species Residue at Site 115
in 'muscle'
msaprobs

The residue for every species at site 115 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Kpol.paralog1.duplicate SNDS------ - -GDE----NT  
Sbay.Paralog2 DDEEDDDEDK S SVEP----ST Site 139
Ylip.ancMcm1 NVLKRESSQG G PGDV----GS Site 216
Cgla.paralog2 IENEQENENE N ENDD----ED Site 151
Xbla.paralog1 PTSDSVNTPG N QDVV----AT Site 205
Ndar.paralog1.duplicate VEN------- - --------TP  
Ndar.paralog2 EEEEDEDEED V AIDSESYRES Site 128
Ndar.paralog1 TNSK------ - ----------  
Cgla.paralog1 SNSVLNEMSA E PKSN----NG Site 153
Xbla.paralog1.duplicate SSTNTDPNSS T TLTN----NP Site 218
Lelo.ancMcm1 ISSSLSNPPM D DDDD----DE Site 131
Xafr.paralog1 QDIKESQTSH I EEDP----SL Site 220
Xafr.paralog2 SNNNNVNKDS L VEGT----NN Site 140
Ncas.paralog1 EQNIE----- - -KDD----SI  
ABR.ancMcm1 AEKA------ - ----------  

Generated by PhyloBot at 12:40, January 19th 2021
Questions/Comments? help@phylobot.com