Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 112 in Alignment 'muscle'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 112 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 112 in 'muscle'
to Sites in 'msaprobs'

What percentage of the residues at this site in muscle are inferred to be a single site (i.e. homologous) in the alignments produced by msaprobs? A value of 100% indicates that the existence of site 112 is reproduced using the msaprobs method. Values less than 100% indicate that msaprobs made different homology inferences for the residues at this site.


Species Residue at Site 112
in 'muscle'
msaprobs

The residue for every species at site 112 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Tdel.paralog2 --EMMRAQDE D PSTMDQS--- Site 216
Clus.ancMcm1 --GAQFSRGS V SGVGGDD--- Site 119
Tdel.paralog1 --DIEDV--- - ----------  
Kpol.paralog2 --KVESTEAH L ENGARPY--- Site 219
Kpol.paralog1 --DVDDI--- - ----DDS---  
Tpha.paralog1 --AIDDDASH - ----LED---  
Tpha.paralog2 --MTDHK--- - ----------  
Klac.ancMcm1 --DSEVK--- - ----DDS---  
Cgla.paralog1.duplicate --DIDED--- - ----------  
Ncas.Paralog2 --AIDVGEDD E EEEEGDE--- Site 133
Kthe.ancMcm1 --DTGVD--- - ----DKE---  
Scer.Paralog2 --EQDQEGDF D EEDDDDK--- Site 131
Kwal.ancMcm1 --DTGAD--- - ----EKE---  
Xafr.paralog1.duplicate --DKEEN--- - ----------  
Scer.Paralog1 --DIEEG--- - ----------  
Sbay.paralog1 --DIEEG--- - ----------  
Ncas.paralog1.duplicate --DTESGVQD Q IIINNQE--- Site 215
Lklu.ancMcm1 --PTEEK--- - ----------  
Calb.ancMcm1 --NSNNNADV S APVDDDD--- Site 120
Ecym.ancMcm1 --DTEKQ--- - ----------  
Zrou.paralog2 --DEERNRTP A SVDTQEP--- Site 216
Zrou.paralog1 --DIDDV--- - ----ED----  
Xnag.paralog1 --PANSAGNN V GGDPDTP--- Site 219
Tpha.paralog1.duplicate --DSEDHKLD L KTDSKDS--- Site 216
Xnag.paralog2 --DEEEEDEE E DDEDEDD--- Site 202
Species Residue at Site 112
in 'muscle'
msaprobs

The residue for every species at site 112 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Kpol.paralog1.duplicate --DSNDS--- - ----GDE---  
Sbay.Paralog2 --DDDEEDDD E DKSSVEP--- Site 136
Ylip.ancMcm1 --DNVLKRES S QGGPGDV--- Site 213
Cgla.paralog2 EHEIENEQEN E NENENDD--- Site 148
Xbla.paralog1 --DPTSDSVN T PGNQDVV--- Site 202
Ndar.paralog1.duplicate --DVEN---- - ----------  
Ndar.paralog2 EEDEEEEDED E EDVAIDSESY Site 125
Ndar.paralog1 --DTNSK--- - ----------  
Cgla.paralog1 --GSNSVLNE M SAEPKSN--- Site 122
Xbla.paralog1.duplicate --NSSTNTDP N SSTTLTN--- Site 215
Lelo.ancMcm1 --PISSSLSN P PMDDDDD--- Site 121
Xafr.paralog1 --DQDIKESQ T SHIEEDP--- Site 217
Xafr.paralog2 --NSNNNNVN K DSLVEGT--- Site 137
Ncas.paralog1 --EEQNIE-- - ----KDD---  
ABR.ancMcm1 --DAEKA--- - ----------  

Generated by PhyloBot at 11:58, January 19th 2021
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