If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016
Overview | Alignments | Sites | Trees | Ancestors | Mutations
What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 112 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.
| Species | Residue at Site 112 in 'muscle' |
msaprobs
The residue for every species at site 112 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number. |
||
|---|---|---|---|---|
| Tdel.paralog2 | --EMMRAQDE | D | PSTMDQS--- | Site 216 |
| Clus.ancMcm1 | --GAQFSRGS | V | SGVGGDD--- | Site 119 |
| Tdel.paralog1 | --DIEDV--- | - | ---------- | |
| Kpol.paralog2 | --KVESTEAH | L | ENGARPY--- | Site 219 |
| Kpol.paralog1 | --DVDDI--- | - | ----DDS--- | |
| Tpha.paralog1 | --AIDDDASH | - | ----LED--- | |
| Tpha.paralog2 | --MTDHK--- | - | ---------- | |
| Klac.ancMcm1 | --DSEVK--- | - | ----DDS--- | |
| Cgla.paralog1.duplicate | --DIDED--- | - | ---------- | |
| Ncas.Paralog2 | --AIDVGEDD | E | EEEEGDE--- | Site 133 |
| Kthe.ancMcm1 | --DTGVD--- | - | ----DKE--- | |
| Scer.Paralog2 | --EQDQEGDF | D | EEDDDDK--- | Site 131 |
| Kwal.ancMcm1 | --DTGAD--- | - | ----EKE--- | |
| Xafr.paralog1.duplicate | --DKEEN--- | - | ---------- | |
| Scer.Paralog1 | --DIEEG--- | - | ---------- | |
| Sbay.paralog1 | --DIEEG--- | - | ---------- | |
| Ncas.paralog1.duplicate | --DTESGVQD | Q | IIINNQE--- | Site 215 |
| Lklu.ancMcm1 | --PTEEK--- | - | ---------- | |
| Calb.ancMcm1 | --NSNNNADV | S | APVDDDD--- | Site 120 |
| Ecym.ancMcm1 | --DTEKQ--- | - | ---------- | |
| Zrou.paralog2 | --DEERNRTP | A | SVDTQEP--- | Site 216 |
| Zrou.paralog1 | --DIDDV--- | - | ----ED---- | |
| Xnag.paralog1 | --PANSAGNN | V | GGDPDTP--- | Site 219 |
| Tpha.paralog1.duplicate | --DSEDHKLD | L | KTDSKDS--- | Site 216 |
| Xnag.paralog2 | --DEEEEDEE | E | DDEDEDD--- | Site 202 | Species | Residue at Site 112 in 'muscle' |
msaprobs
The residue for every species at site 112 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number. |
| Kpol.paralog1.duplicate | --DSNDS--- | - | ----GDE--- | |
| Sbay.Paralog2 | --DDDEEDDD | E | DKSSVEP--- | Site 136 |
| Ylip.ancMcm1 | --DNVLKRES | S | QGGPGDV--- | Site 213 |
| Cgla.paralog2 | EHEIENEQEN | E | NENENDD--- | Site 148 |
| Xbla.paralog1 | --DPTSDSVN | T | PGNQDVV--- | Site 202 |
| Ndar.paralog1.duplicate | --DVEN---- | - | ---------- | |
| Ndar.paralog2 | EEDEEEEDED | E | EDVAIDSESY | Site 125 |
| Ndar.paralog1 | --DTNSK--- | - | ---------- | |
| Cgla.paralog1 | --GSNSVLNE | M | SAEPKSN--- | Site 122 |
| Xbla.paralog1.duplicate | --NSSTNTDP | N | SSTTLTN--- | Site 215 |
| Lelo.ancMcm1 | --PISSSLSN | P | PMDDDDD--- | Site 121 |
| Xafr.paralog1 | --DQDIKESQ | T | SHIEEDP--- | Site 217 |
| Xafr.paralog2 | --NSNNNNVN | K | DSLVEGT--- | Site 137 |
| Ncas.paralog1 | --EEQNIE-- | - | ----KDD--- | |
| ABR.ancMcm1 | --DAEKA--- | - | ---------- |
Generated by PhyloBot at 11:58, January 19th 2021
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