Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 111 in Alignment 'muscle'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 111 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 111 in 'muscle'
to Sites in 'msaprobs'

What percentage of the residues at this site in muscle are inferred to be a single site (i.e. homologous) in the alignments produced by msaprobs? A value of 100% indicates that the existence of site 111 is reproduced using the msaprobs method. Values less than 100% indicate that msaprobs made different homology inferences for the residues at this site.


Species Residue at Site 111
in 'muscle'
msaprobs

The residue for every species at site 111 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Tdel.paralog2 ---EMMRAQD E DPSTMDQS-- Site 215
Clus.ancMcm1 ---GAQFSRG S VSGVGGDD-- Site 118
Tdel.paralog1 ---DIEDV-- - ----------  
Kpol.paralog2 ---KVESTEA H LENGARPY-- Site 218
Kpol.paralog1 ---DVDDI-- - -----DDS--  
Tpha.paralog1 ---AIDDDAS H -----LED-- Site 219
Tpha.paralog2 ---MTDHK-- - ----------  
Klac.ancMcm1 ---DSEVK-- - -----DDS--  
Cgla.paralog1.duplicate ---DIDED-- - ----------  
Ncas.Paralog2 ---AIDVGED D EEEEEGDE-- Site 132
Kthe.ancMcm1 ---DTGVD-- - -----DKE--  
Scer.Paralog2 ---EQDQEGD F DEEDDDDK-- Site 130
Kwal.ancMcm1 ---DTGAD-- - -----EKE--  
Xafr.paralog1.duplicate ---DKEEN-- - ----------  
Scer.Paralog1 ---DIEEG-- - ----------  
Sbay.paralog1 ---DIEEG-- - ----------  
Ncas.paralog1.duplicate ---DTESGVQ D QIIINNQE-- Site 214
Lklu.ancMcm1 ---PTEEK-- - ----------  
Calb.ancMcm1 ---NSNNNAD V SAPVDDDD-- Site 119
Ecym.ancMcm1 ---DTEKQ-- - ----------  
Zrou.paralog2 ---DEERNRT P ASVDTQEP-- Site 156
Zrou.paralog1 ---DIDDV-- - -----ED---  
Xnag.paralog1 ---PANSAGN N VGGDPDTP-- Site 218
Tpha.paralog1.duplicate ---DSEDHKL D LKTDSKDS-- Site 156
Xnag.paralog2 ---DEEEEDE E EDDEDEDD-- Site 201
Species Residue at Site 111
in 'muscle'
msaprobs

The residue for every species at site 111 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Kpol.paralog1.duplicate ---DSNDS-- - -----GDE--  
Sbay.Paralog2 ---DDDEEDD D EDKSSVEP-- Site 135
Ylip.ancMcm1 ---DNVLKRE S SQGGPGDV-- Site 212
Cgla.paralog2 NEHEIENEQE N ENENENDD-- Site 147
Xbla.paralog1 ---DPTSDSV N TPGNQDVV-- Site 201
Ndar.paralog1.duplicate ---DVEN--- - ----------  
Ndar.paralog2 KEEDEEEEDE D EEDVAIDSES Site 124
Ndar.paralog1 ---DTNSK-- - ----------  
Cgla.paralog1 ---GSNSVLN E MSAEPKSN-- Site 121
Xbla.paralog1.duplicate ---NSSTNTD P NSSTTLTN-- Site 214
Lelo.ancMcm1 ---PISSSLS N PPMDDDDD-- Site 120
Xafr.paralog1 ---DQDIKES Q TSHIEEDP-- Site 216
Xafr.paralog2 ---NSNNNNV N KDSLVEGT-- Site 136
Ncas.paralog1 ---EEQNIE- - -----KDD--  
ABR.ancMcm1 ---DAEKA-- - ----------  

Generated by PhyloBot at 12:33, January 19th 2021
Questions/Comments? help@phylobot.com