Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 108 in Alignment 'muscle'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 108 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 108 in 'muscle'
to Sites in 'msaprobs'

What percentage of the residues at this site in muscle are inferred to be a single site (i.e. homologous) in the alignments produced by msaprobs? A value of 100% indicates that the existence of site 108 is reproduced using the msaprobs method. Values less than 100% indicate that msaprobs made different homology inferences for the residues at this site.


Species Residue at Site 108
in 'muscle'
msaprobs

The residue for every species at site 108 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Tdel.paralog2 ------EMMR A QDEDPSTMDQ Site 212
Clus.ancMcm1 ------GAQF S RGSVSGVGGD Site 115
Tdel.paralog1 ------DIED V ---------- Site 90
Kpol.paralog2 ------KVES T EAHLENGARP Site 90
Kpol.paralog1 ------DVDD I --------DD Site 90
Tpha.paralog1 ------AIDD D ASH-----LE Site 216
Tpha.paralog2 ------MTDH K ---------- Site 242
Klac.ancMcm1 ------DSEV K --------DD Site 90
Cgla.paralog1.duplicate ------DIDE D ---------- Site 90
Ncas.Paralog2 ------AIDV G EDDEEEEEGD Site 129
Kthe.ancMcm1 ------DTGV D --------DK Site 90
Scer.Paralog2 ------EQDQ E GDFDEEDDDD Site 127
Kwal.ancMcm1 ------DTGA D --------EK Site 90
Xafr.paralog1.duplicate ------DKEE N ---------- Site 90
Scer.Paralog1 ------DIEE G ---------- Site 90
Sbay.paralog1 ------DIEE G ---------- Site 90
Ncas.paralog1.duplicate ------DTES G VQDQIIINNQ Site 90
Lklu.ancMcm1 ------PTEE K ---------- Site 156
Calb.ancMcm1 ------NSNN N ADVSAPVDDD Site 116
Ecym.ancMcm1 ------DTEK Q ---------- Site 233
Zrou.paralog2 ------DEER N RTPASVDTQE Site 80
Zrou.paralog1 ------DIDD V --------ED Site 90
Xnag.paralog1 ------PANS A GNNVGGDPDT Site 215
Tpha.paralog1.duplicate ------DSED H KLDLKTDSKD Site 90
Xnag.paralog2 ------DEEE E DEEEDDEDED Site 198
Species Residue at Site 108
in 'muscle'
msaprobs

The residue for every species at site 108 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Kpol.paralog1.duplicate ------DSND S --------GD Site 90
Sbay.Paralog2 ------DDDE E DDDEDKSSVE Site 132
Ylip.ancMcm1 ------DNVL K RESSQGGPGD Site 209
Cgla.paralog2 GNGNEHEIEN E QENENENEND Site 144
Xbla.paralog1 ------DPTS D SVNTPGNQDV Site 198
Ndar.paralog1.duplicate ------DVEN - ----------  
Ndar.paralog2 GGGKEEDEEE E DEDEEDVAID Site 121
Ndar.paralog1 ------DTNS K ---------- Site 90
Cgla.paralog1 ------GSNS V LNEMSAEPKS Site 118
Xbla.paralog1.duplicate ------NSST N TDPNSSTTLT Site 211
Lelo.ancMcm1 ------PISS S LSNPPMDDDD Site 117
Xafr.paralog1 ------DQDI K ESQTSHIEED Site 90
Xafr.paralog2 ------NSNN N NVNKDSLVEG Site 133
Ncas.paralog1 ------EEQN I E-------KD Site 90
ABR.ancMcm1 ------DAEK A ---------- Site 233

Generated by PhyloBot at 11:06, January 19th 2021
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