Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 107 in Alignment 'muscle'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 107 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 107 in 'muscle'
to Sites in 'msaprobs'

What percentage of the residues at this site in muscle are inferred to be a single site (i.e. homologous) in the alignments produced by msaprobs? A value of 100% indicates that the existence of site 107 is reproduced using the msaprobs method. Values less than 100% indicate that msaprobs made different homology inferences for the residues at this site.


Species Residue at Site 107
in 'muscle'
msaprobs

The residue for every species at site 107 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Tdel.paralog2 -------EMM R AQDEDPSTMD Site 211
Clus.ancMcm1 -------GAQ F SRGSVSGVGG Site 114
Tdel.paralog1 -------DIE D V--------- Site 80
Kpol.paralog2 -------KVE S TEAHLENGAR Site 80
Kpol.paralog1 -------DVD D I--------D Site 80
Tpha.paralog1 -------AID D DASH-----L Site 215
Tpha.paralog2 -------MTD H K--------- Site 241
Klac.ancMcm1 -------DSE V K--------D Site 80
Cgla.paralog1.duplicate -------DID E D--------- Site 80
Ncas.Paralog2 -------AID V GEDDEEEEEG Site 128
Kthe.ancMcm1 -------DTG V D--------D Site 80
Scer.Paralog2 -------EQD Q EGDFDEEDDD Site 126
Kwal.ancMcm1 -------DTG A D--------E Site 80
Xafr.paralog1.duplicate -------DKE E N--------- Site 80
Scer.Paralog1 -------DIE E G--------- Site 80
Sbay.paralog1 -------DIE E G--------- Site 80
Ncas.paralog1.duplicate -------DTE S GVQDQIIINN Site 80
Lklu.ancMcm1 -------PTE E K--------- Site 154
Calb.ancMcm1 -------NSN N NADVSAPVDD Site 115
Ecym.ancMcm1 -------DTE K Q--------- Site 80
Zrou.paralog2 -------DEE R NRTPASVDTQ Site 76
Zrou.paralog1 -------DID D V--------E Site 80
Xnag.paralog1 -------PAN S AGNNVGGDPD Site 214
Tpha.paralog1.duplicate -------DSE D HKLDLKTDSK Site 80
Xnag.paralog2 -------DEE E EDEEEDDEDE Site 197
Species Residue at Site 107
in 'muscle'
msaprobs

The residue for every species at site 107 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Kpol.paralog1.duplicate -------DSN D S--------G Site 80
Sbay.Paralog2 -------DDD E EDDDEDKSSV Site 131
Ylip.ancMcm1 -------DNV L KRESSQGGPG Site 208
Cgla.paralog2 NGNGNEHEIE N EQENENENEN Site 143
Xbla.paralog1 -------DPT S DSVNTPGNQD Site 197
Ndar.paralog1.duplicate -------DVE N ---------- Site 80
Ndar.paralog2 EGGGKEEDEE E EDEDEEDVAI Site 120
Ndar.paralog1 -------DTN S K--------- Site 80
Cgla.paralog1 -------GSN S VLNEMSAEPK Site 117
Xbla.paralog1.duplicate -------NSS T NTDPNSSTTL Site 210
Lelo.ancMcm1 -------PIS S SLSNPPMDDD Site 116
Xafr.paralog1 -------DQD I KESQTSHIEE Site 80
Xafr.paralog2 -------NSN N NNVNKDSLVE Site 132
Ncas.paralog1 -------EEQ N IE-------K Site 80
ABR.ancMcm1 -------DAE K A--------- Site 80

Generated by PhyloBot at 11:44, January 19th 2021
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