If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016
Overview | Alignments | Sites | Trees | Ancestors | Mutations
What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 106 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.
| Species | Residue at Site 106 in 'muscle' |
msaprobs
The residue for every species at site 106 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number. |
||
|---|---|---|---|---|
| Tdel.paralog2 | --------EM | M | RAQDEDPSTM | Site 210 |
| Clus.ancMcm1 | --------GA | Q | FSRGSVSGVG | Site 113 |
| Tdel.paralog1 | --------DI | E | DV-------- | Site 76 |
| Kpol.paralog2 | --------KV | E | STEAHLENGA | Site 76 |
| Kpol.paralog1 | --------DV | D | DI-------- | Site 76 |
| Tpha.paralog1 | --------AI | D | DDASH----- | Site 214 |
| Tpha.paralog2 | --------MT | D | HK-------- | Site 3 |
| Klac.ancMcm1 | --------DS | E | VK-------- | Site 76 |
| Cgla.paralog1.duplicate | --------DI | D | ED-------- | Site 76 |
| Ncas.Paralog2 | --------AI | D | VGEDDEEEEE | Site 127 |
| Kthe.ancMcm1 | --------DT | G | VD-------- | Site 76 |
| Scer.Paralog2 | --------EQ | D | QEGDFDEEDD | Site 125 |
| Kwal.ancMcm1 | --------DT | G | AD-------- | Site 76 |
| Xafr.paralog1.duplicate | --------DK | E | EN-------- | Site 76 |
| Scer.Paralog1 | --------DI | E | EG-------- | Site 76 |
| Sbay.paralog1 | --------DI | E | EG-------- | Site 76 |
| Ncas.paralog1.duplicate | --------DT | E | SGVQDQIIIN | Site 76 |
| Lklu.ancMcm1 | --------PT | E | EK-------- | Site 90 |
| Calb.ancMcm1 | --------NS | N | NNADVSAPVD | Site 114 |
| Ecym.ancMcm1 | --------DT | E | KQ-------- | Site 76 |
| Zrou.paralog2 | --------DE | E | RNRTPASVDT | Site 4 |
| Zrou.paralog1 | --------DI | D | DV-------- | Site 76 |
| Xnag.paralog1 | --------PA | N | SAGNNVGGDP | Site 213 |
| Tpha.paralog1.duplicate | --------DS | E | DHKLDLKTDS | Site 76 |
| Xnag.paralog2 | --------DE | E | EEDEEEDDED | Site 196 | Species | Residue at Site 106 in 'muscle' |
msaprobs
The residue for every species at site 106 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number. |
| Kpol.paralog1.duplicate | --------DS | N | DS-------- | Site 76 |
| Sbay.Paralog2 | --------DD | D | EEDDDEDKSS | Site 130 |
| Ylip.ancMcm1 | --------DN | V | LKRESSQGGP | Site 207 |
| Cgla.paralog2 | GNGNGNEHEI | E | NEQENENENE | Site 142 |
| Xbla.paralog1 | --------DP | T | SDSVNTPGNQ | Site 196 |
| Ndar.paralog1.duplicate | --------DV | E | N--------- | Site 76 |
| Ndar.paralog2 | GEGGGKEEDE | E | EEDEDEEDVA | Site 119 |
| Ndar.paralog1 | --------DT | N | SK-------- | Site 76 |
| Cgla.paralog1 | --------GS | N | SVLNEMSAEP | Site 116 |
| Xbla.paralog1.duplicate | --------NS | S | TNTDPNSSTT | Site 209 |
| Lelo.ancMcm1 | --------PI | S | SSLSNPPMDD | Site 115 |
| Xafr.paralog1 | --------DQ | D | IKESQTSHIE | Site 76 |
| Xafr.paralog2 | --------NS | N | NNNVNKDSLV | Site 131 |
| Ncas.paralog1 | --------EE | Q | NIE------- | Site 76 |
| ABR.ancMcm1 | --------DA | E | KA-------- | Site 76 |
Generated by PhyloBot at 12:20, January 19th 2021
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