Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 106 in Alignment 'muscle'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 106 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 106 in 'muscle'
to Sites in 'msaprobs'

What percentage of the residues at this site in muscle are inferred to be a single site (i.e. homologous) in the alignments produced by msaprobs? A value of 100% indicates that the existence of site 106 is reproduced using the msaprobs method. Values less than 100% indicate that msaprobs made different homology inferences for the residues at this site.


Species Residue at Site 106
in 'muscle'
msaprobs

The residue for every species at site 106 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Tdel.paralog2 --------EM M RAQDEDPSTM Site 210
Clus.ancMcm1 --------GA Q FSRGSVSGVG Site 113
Tdel.paralog1 --------DI E DV-------- Site 76
Kpol.paralog2 --------KV E STEAHLENGA Site 76
Kpol.paralog1 --------DV D DI-------- Site 76
Tpha.paralog1 --------AI D DDASH----- Site 214
Tpha.paralog2 --------MT D HK-------- Site 3
Klac.ancMcm1 --------DS E VK-------- Site 76
Cgla.paralog1.duplicate --------DI D ED-------- Site 76
Ncas.Paralog2 --------AI D VGEDDEEEEE Site 127
Kthe.ancMcm1 --------DT G VD-------- Site 76
Scer.Paralog2 --------EQ D QEGDFDEEDD Site 125
Kwal.ancMcm1 --------DT G AD-------- Site 76
Xafr.paralog1.duplicate --------DK E EN-------- Site 76
Scer.Paralog1 --------DI E EG-------- Site 76
Sbay.paralog1 --------DI E EG-------- Site 76
Ncas.paralog1.duplicate --------DT E SGVQDQIIIN Site 76
Lklu.ancMcm1 --------PT E EK-------- Site 90
Calb.ancMcm1 --------NS N NNADVSAPVD Site 114
Ecym.ancMcm1 --------DT E KQ-------- Site 76
Zrou.paralog2 --------DE E RNRTPASVDT Site 4
Zrou.paralog1 --------DI D DV-------- Site 76
Xnag.paralog1 --------PA N SAGNNVGGDP Site 213
Tpha.paralog1.duplicate --------DS E DHKLDLKTDS Site 76
Xnag.paralog2 --------DE E EEDEEEDDED Site 196
Species Residue at Site 106
in 'muscle'
msaprobs

The residue for every species at site 106 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Kpol.paralog1.duplicate --------DS N DS-------- Site 76
Sbay.Paralog2 --------DD D EEDDDEDKSS Site 130
Ylip.ancMcm1 --------DN V LKRESSQGGP Site 207
Cgla.paralog2 GNGNGNEHEI E NEQENENENE Site 142
Xbla.paralog1 --------DP T SDSVNTPGNQ Site 196
Ndar.paralog1.duplicate --------DV E N--------- Site 76
Ndar.paralog2 GEGGGKEEDE E EEDEDEEDVA Site 119
Ndar.paralog1 --------DT N SK-------- Site 76
Cgla.paralog1 --------GS N SVLNEMSAEP Site 116
Xbla.paralog1.duplicate --------NS S TNTDPNSSTT Site 209
Lelo.ancMcm1 --------PI S SSLSNPPMDD Site 115
Xafr.paralog1 --------DQ D IKESQTSHIE Site 76
Xafr.paralog2 --------NS N NNNVNKDSLV Site 131
Ncas.paralog1 --------EE Q NIE------- Site 76
ABR.ancMcm1 --------DA E KA-------- Site 76

Generated by PhyloBot at 12:20, January 19th 2021
Questions/Comments? help@phylobot.com