Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 105 in Alignment 'muscle'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 105 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 105 in 'muscle'
to Sites in 'msaprobs'

What percentage of the residues at this site in muscle are inferred to be a single site (i.e. homologous) in the alignments produced by msaprobs? A value of 100% indicates that the existence of site 105 is reproduced using the msaprobs method. Values less than 100% indicate that msaprobs made different homology inferences for the residues at this site.


Species Residue at Site 105
in 'muscle'
msaprobs

The residue for every species at site 105 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Tdel.paralog2 ---------E M MRAQDEDPST Site 209
Clus.ancMcm1 ---------G A QFSRGSVSGV Site 112
Tdel.paralog1 ---------D I EDV------- Site 4
Kpol.paralog2 ---------K V ESTEAHLENG Site 4
Kpol.paralog1 ---------D V DDI------- Site 4
Tpha.paralog1 ---------A I DDDASH---- Site 213
Tpha.paralog2 ---------M T DHK------- Site 2
Klac.ancMcm1 ---------D S EVK------- Site 4
Cgla.paralog1.duplicate ---------D I DED------- Site 4
Ncas.Paralog2 ---------A I DVGEDDEEEE Site 126
Kthe.ancMcm1 ---------D T GVD------- Site 4
Scer.Paralog2 ---------E Q DQEGDFDEED Site 124
Kwal.ancMcm1 ---------D T GAD------- Site 4
Xafr.paralog1.duplicate ---------D K EEN------- Site 4
Scer.Paralog1 ---------D I EEG------- Site 4
Sbay.paralog1 ---------D I EEG------- Site 4
Ncas.paralog1.duplicate ---------D T ESGVQDQIII Site 4
Lklu.ancMcm1 ---------P T EEK------- Site 80
Calb.ancMcm1 ---------N S NNNADVSAPV Site 113
Ecym.ancMcm1 ---------D T EKQ------- Site 4
Zrou.paralog2 ---------D E ERNRTPASVD Site 3
Zrou.paralog1 ---------D I DDV------- Site 4
Xnag.paralog1 ---------P A NSAGNNVGGD Site 212
Tpha.paralog1.duplicate ---------D S EDHKLDLKTD Site 4
Xnag.paralog2 ---------D E EEEDEEEDDE Site 156
Species Residue at Site 105
in 'muscle'
msaprobs

The residue for every species at site 105 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Kpol.paralog1.duplicate ---------D S NDS------- Site 4
Sbay.Paralog2 ---------D D DEEDDDEDKS Site 129
Ylip.ancMcm1 ---------D N VLKRESSQGG Site 206
Cgla.paralog2 KGNGNGNEHE I ENEQENENEN Site 141
Xbla.paralog1 ---------D P TSDSVNTPGN Site 195
Ndar.paralog1.duplicate ---------D V EN-------- Site 4
Ndar.paralog2 EGEGGGKEED E EEEDEDEEDV Site 118
Ndar.paralog1 ---------D T NSK------- Site 4
Cgla.paralog1 ---------G S NSVLNEMSAE Site 115
Xbla.paralog1.duplicate ---------N S STNTDPNSST Site 208
Lelo.ancMcm1 ---------P I SSSLSNPPMD Site 114
Xafr.paralog1 ---------D Q DIKESQTSHI Site 4
Xafr.paralog2 ---------N S NNNNVNKDSL Site 130
Ncas.paralog1 ---------E E QNIE------ Site 4
ABR.ancMcm1 ---------D A EKA------- Site 4

Generated by PhyloBot at 12:55, January 19th 2021
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