If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016
Overview | Alignments | Sites | Trees | Ancestors | Mutations
What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 102 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.
| Species | Residue at Site 102 in 'muscle' |
msaprobs
The residue for every species at site 102 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number. |
||
|---|---|---|---|---|
| Tdel.paralog2 | ---------- | - | -EMMRAQDED | |
| Clus.ancMcm1 | ---------- | - | -GAQFSRGSV | |
| Tdel.paralog1 | ---------- | - | -DIEDV---- | |
| Kpol.paralog2 | ---------- | - | -KVESTEAHL | |
| Kpol.paralog1 | ---------- | - | -DVDDI---- | |
| Tpha.paralog1 | ---------- | - | -AIDDDASH- | |
| Tpha.paralog2 | ---------- | - | -MTDHK---- | |
| Klac.ancMcm1 | ---------- | - | -DSEVK---- | |
| Cgla.paralog1.duplicate | ---------- | - | -DIDED---- | |
| Ncas.Paralog2 | ---------- | - | -AIDVGEDDE | |
| Kthe.ancMcm1 | ---------- | - | -DTGVD---- | |
| Scer.Paralog2 | ---------- | - | -EQDQEGDFD | |
| Kwal.ancMcm1 | ---------- | - | -DTGAD---- | |
| Xafr.paralog1.duplicate | ---------- | - | -DKEEN---- | |
| Scer.Paralog1 | ---------- | - | -DIEEG---- | |
| Sbay.paralog1 | ---------- | - | -DIEEG---- | |
| Ncas.paralog1.duplicate | ---------- | - | -DTESGVQDQ | |
| Lklu.ancMcm1 | ---------- | - | -PTEEK---- | |
| Calb.ancMcm1 | ---------- | - | -NSNNNADVS | |
| Ecym.ancMcm1 | ---------- | - | -DTEKQ---- | |
| Zrou.paralog2 | ---------- | - | -DEERNRTPA | |
| Zrou.paralog1 | ---------- | - | -DIDDV---- | |
| Xnag.paralog1 | ---------- | - | -PANSAGNNV | |
| Tpha.paralog1.duplicate | ---------- | - | -DSEDHKLDL | |
| Xnag.paralog2 | ---------- | - | -DEEEEDEEE | Species | Residue at Site 102 in 'muscle' |
msaprobs
The residue for every species at site 102 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number. |
| Kpol.paralog1.duplicate | ---------- | - | -DSNDS---- | |
| Sbay.Paralog2 | ---------- | - | -DDDEEDDDE | |
| Ylip.ancMcm1 | ---------- | - | -DNVLKRESS | |
| Cgla.paralog2 | YSDKGNGNGN | E | HEIENEQENE | Site 138 |
| Xbla.paralog1 | ---------- | - | -DPTSDSVNT | |
| Ndar.paralog1.duplicate | ---------- | - | -DVEN----- | |
| Ndar.paralog2 | GLDEGEGGGK | E | EDEEEEDEDE | Site 115 |
| Ndar.paralog1 | ---------- | - | -DTNSK---- | |
| Cgla.paralog1 | ---------- | - | -GSNSVLNEM | |
| Xbla.paralog1.duplicate | ---------- | - | -NSSTNTDPN | |
| Lelo.ancMcm1 | ---------- | - | -PISSSLSNP | |
| Xafr.paralog1 | ---------- | - | -DQDIKESQT | |
| Xafr.paralog2 | ---------- | - | -NSNNNNVNK | |
| Ncas.paralog1 | ---------- | - | -EEQNIE--- | |
| ABR.ancMcm1 | ---------- | - | -DAEKA---- |
Generated by PhyloBot at 12:13, January 19th 2021
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