Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 102 in Alignment 'muscle'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 102 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 102 in 'muscle'
to Sites in 'msaprobs'

What percentage of the residues at this site in muscle are inferred to be a single site (i.e. homologous) in the alignments produced by msaprobs? A value of 100% indicates that the existence of site 102 is reproduced using the msaprobs method. Values less than 100% indicate that msaprobs made different homology inferences for the residues at this site.


Species Residue at Site 102
in 'muscle'
msaprobs

The residue for every species at site 102 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Tdel.paralog2 ---------- - -EMMRAQDED  
Clus.ancMcm1 ---------- - -GAQFSRGSV  
Tdel.paralog1 ---------- - -DIEDV----  
Kpol.paralog2 ---------- - -KVESTEAHL  
Kpol.paralog1 ---------- - -DVDDI----  
Tpha.paralog1 ---------- - -AIDDDASH-  
Tpha.paralog2 ---------- - -MTDHK----  
Klac.ancMcm1 ---------- - -DSEVK----  
Cgla.paralog1.duplicate ---------- - -DIDED----  
Ncas.Paralog2 ---------- - -AIDVGEDDE  
Kthe.ancMcm1 ---------- - -DTGVD----  
Scer.Paralog2 ---------- - -EQDQEGDFD  
Kwal.ancMcm1 ---------- - -DTGAD----  
Xafr.paralog1.duplicate ---------- - -DKEEN----  
Scer.Paralog1 ---------- - -DIEEG----  
Sbay.paralog1 ---------- - -DIEEG----  
Ncas.paralog1.duplicate ---------- - -DTESGVQDQ  
Lklu.ancMcm1 ---------- - -PTEEK----  
Calb.ancMcm1 ---------- - -NSNNNADVS  
Ecym.ancMcm1 ---------- - -DTEKQ----  
Zrou.paralog2 ---------- - -DEERNRTPA  
Zrou.paralog1 ---------- - -DIDDV----  
Xnag.paralog1 ---------- - -PANSAGNNV  
Tpha.paralog1.duplicate ---------- - -DSEDHKLDL  
Xnag.paralog2 ---------- - -DEEEEDEEE  
Species Residue at Site 102
in 'muscle'
msaprobs

The residue for every species at site 102 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Kpol.paralog1.duplicate ---------- - -DSNDS----  
Sbay.Paralog2 ---------- - -DDDEEDDDE  
Ylip.ancMcm1 ---------- - -DNVLKRESS  
Cgla.paralog2 YSDKGNGNGN E HEIENEQENE Site 138
Xbla.paralog1 ---------- - -DPTSDSVNT  
Ndar.paralog1.duplicate ---------- - -DVEN-----  
Ndar.paralog2 GLDEGEGGGK E EDEEEEDEDE Site 115
Ndar.paralog1 ---------- - -DTNSK----  
Cgla.paralog1 ---------- - -GSNSVLNEM  
Xbla.paralog1.duplicate ---------- - -NSSTNTDPN  
Lelo.ancMcm1 ---------- - -PISSSLSNP  
Xafr.paralog1 ---------- - -DQDIKESQT  
Xafr.paralog2 ---------- - -NSNNNNVNK  
Ncas.paralog1 ---------- - -EEQNIE---  
ABR.ancMcm1 ---------- - -DAEKA----  

Generated by PhyloBot at 12:13, January 19th 2021
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