If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016
Overview | Alignments | Sites | Trees | Ancestors | Mutations
What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 100 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.
| Species | Residue at Site 100 in 'muscle' |
msaprobs
The residue for every species at site 100 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number. |
||
|---|---|---|---|---|
| Tdel.paralog2 | ---------- | - | ---EMMRAQD | |
| Clus.ancMcm1 | ---------- | - | ---GAQFSRG | |
| Tdel.paralog1 | ---------- | - | ---DIEDV-- | |
| Kpol.paralog2 | ---------- | - | ---KVESTEA | |
| Kpol.paralog1 | ---------- | - | ---DVDDI-- | |
| Tpha.paralog1 | ---------- | - | ---AIDDDAS | |
| Tpha.paralog2 | ---------- | - | ---MTDHK-- | |
| Klac.ancMcm1 | ---------- | - | ---DSEVK-- | |
| Cgla.paralog1.duplicate | ---------- | - | ---DIDED-- | |
| Ncas.Paralog2 | ---------- | - | ---AIDVGED | |
| Kthe.ancMcm1 | ---------- | - | ---DTGVD-- | |
| Scer.Paralog2 | ---------- | - | ---EQDQEGD | |
| Kwal.ancMcm1 | ---------- | - | ---DTGAD-- | |
| Xafr.paralog1.duplicate | ---------- | - | ---DKEEN-- | |
| Scer.Paralog1 | ---------- | - | ---DIEEG-- | |
| Sbay.paralog1 | ---------- | - | ---DIEEG-- | |
| Ncas.paralog1.duplicate | ---------- | - | ---DTESGVQ | |
| Lklu.ancMcm1 | ---------- | - | ---PTEEK-- | |
| Calb.ancMcm1 | ---------- | - | ---NSNNNAD | |
| Ecym.ancMcm1 | ---------- | - | ---DTEKQ-- | |
| Zrou.paralog2 | ---------- | - | ---DEERNRT | |
| Zrou.paralog1 | ---------- | - | ---DIDDV-- | |
| Xnag.paralog1 | ---------- | - | ---PANSAGN | |
| Tpha.paralog1.duplicate | ---------- | - | ---DSEDHKL | |
| Xnag.paralog2 | ---------- | - | ---DEEEEDE | Species | Residue at Site 100 in 'muscle' |
msaprobs
The residue for every species at site 100 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number. |
| Kpol.paralog1.duplicate | ---------- | - | ---DSNDS-- | |
| Sbay.Paralog2 | ---------- | - | ---DDDEEDD | |
| Ylip.ancMcm1 | ---------- | - | ---DNVLKRE | |
| Cgla.paralog2 | RDYSDKGNGN | G | NEHEIENEQE | Site 136 |
| Xbla.paralog1 | ---------- | - | ---DPTSDSV | |
| Ndar.paralog1.duplicate | ---------- | - | ---DVEN--- | |
| Ndar.paralog2 | LGGLDEGEGG | G | KEEDEEEEDE | Site 113 |
| Ndar.paralog1 | ---------- | - | ---DTNSK-- | |
| Cgla.paralog1 | ---------- | - | ---GSNSVLN | |
| Xbla.paralog1.duplicate | ---------- | - | ---NSSTNTD | |
| Lelo.ancMcm1 | ---------- | - | ---PISSSLS | |
| Xafr.paralog1 | ---------- | - | ---DQDIKES | |
| Xafr.paralog2 | ---------- | - | ---NSNNNNV | |
| Ncas.paralog1 | ---------- | - | ---EEQNIE- | |
| ABR.ancMcm1 | ---------- | - | ---DAEKA-- |
Generated by PhyloBot at 10:49, January 19th 2021
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