Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 100 in Alignment 'muscle'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 100 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 100 in 'muscle'
to Sites in 'msaprobs'

What percentage of the residues at this site in muscle are inferred to be a single site (i.e. homologous) in the alignments produced by msaprobs? A value of 100% indicates that the existence of site 100 is reproduced using the msaprobs method. Values less than 100% indicate that msaprobs made different homology inferences for the residues at this site.


Species Residue at Site 100
in 'muscle'
msaprobs

The residue for every species at site 100 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Tdel.paralog2 ---------- - ---EMMRAQD  
Clus.ancMcm1 ---------- - ---GAQFSRG  
Tdel.paralog1 ---------- - ---DIEDV--  
Kpol.paralog2 ---------- - ---KVESTEA  
Kpol.paralog1 ---------- - ---DVDDI--  
Tpha.paralog1 ---------- - ---AIDDDAS  
Tpha.paralog2 ---------- - ---MTDHK--  
Klac.ancMcm1 ---------- - ---DSEVK--  
Cgla.paralog1.duplicate ---------- - ---DIDED--  
Ncas.Paralog2 ---------- - ---AIDVGED  
Kthe.ancMcm1 ---------- - ---DTGVD--  
Scer.Paralog2 ---------- - ---EQDQEGD  
Kwal.ancMcm1 ---------- - ---DTGAD--  
Xafr.paralog1.duplicate ---------- - ---DKEEN--  
Scer.Paralog1 ---------- - ---DIEEG--  
Sbay.paralog1 ---------- - ---DIEEG--  
Ncas.paralog1.duplicate ---------- - ---DTESGVQ  
Lklu.ancMcm1 ---------- - ---PTEEK--  
Calb.ancMcm1 ---------- - ---NSNNNAD  
Ecym.ancMcm1 ---------- - ---DTEKQ--  
Zrou.paralog2 ---------- - ---DEERNRT  
Zrou.paralog1 ---------- - ---DIDDV--  
Xnag.paralog1 ---------- - ---PANSAGN  
Tpha.paralog1.duplicate ---------- - ---DSEDHKL  
Xnag.paralog2 ---------- - ---DEEEEDE  
Species Residue at Site 100
in 'muscle'
msaprobs

The residue for every species at site 100 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

Kpol.paralog1.duplicate ---------- - ---DSNDS--  
Sbay.Paralog2 ---------- - ---DDDEEDD  
Ylip.ancMcm1 ---------- - ---DNVLKRE  
Cgla.paralog2 RDYSDKGNGN G NEHEIENEQE Site 136
Xbla.paralog1 ---------- - ---DPTSDSV  
Ndar.paralog1.duplicate ---------- - ---DVEN---  
Ndar.paralog2 LGGLDEGEGG G KEEDEEEEDE Site 113
Ndar.paralog1 ---------- - ---DTNSK--  
Cgla.paralog1 ---------- - ---GSNSVLN  
Xbla.paralog1.duplicate ---------- - ---NSSTNTD  
Lelo.ancMcm1 ---------- - ---PISSSLS  
Xafr.paralog1 ---------- - ---DQDIKES  
Xafr.paralog2 ---------- - ---NSNNNNV  
Ncas.paralog1 ---------- - ---EEQNIE-  
ABR.ancMcm1 ---------- - ---DAEKA--  

Generated by PhyloBot at 10:49, January 19th 2021
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