Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 701 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 701 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 701 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 701 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 701
in 'msaprobs'
muscle

The residue for every species at site 701 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Tdel.paralog2 ---------- - --ETT  
Clus.ancMcm1 NGNMP N PQQYQ Site 497
Tdel.paralog1 ----E S QQGQY Site 498
Kpol.paralog2 ----- - -----  
Kpol.paralog1 ----E T QQGQY Site 498
Tpha.paralog1 ----E N QQNHY Site 498
Tpha.paralog2 ----R F KIRNH Site 498
Klac.ancMcm1 ---VN S QHGQF Site 498
Cgla.paralog1.duplicate ----D Q QAHYG Site 498
Ncas.Paralog2 ----- - --ELE  
Kthe.ancMcm1 ---VN P QQGQY Site 498
Scer.Paralog2 ----- - QSPAN  
Kwal.ancMcm1 ----- - -----  
Xafr.paralog1.duplicate ----D V SENQY Site 498
Scer.Paralog1 ----E P QQGQY Site 498
Sbay.paralog1 ----E P QQGQY Site 498
Ncas.paralog1.duplicate ----E S QQNQF Site 498
Lklu.ancMcm1 ---VN S QQGQY Site 498
Calb.ancMcm1 NNNIP N QQQYQ Site 497
Ecym.ancMcm1 ---VN S QQGQY Site 498
Zrou.paralog2 ----- - -----  
Zrou.paralog1 ----E S QQGHY Site 498
Xnag.paralog1 ----T A QPNQY Site 498
Tpha.paralog1.duplicate ----E T QQTNY Site 498
Xnag.paralog2 ----- - ---PW  
Species Residue at Site 701
in 'msaprobs'
muscle

The residue for every species at site 701 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Kpol.paralog1.duplicate ----E S HQGQY Site 498
Sbay.Paralog2 ----- - --ATN  
Ylip.ancMcm1 ----M P HQAHQ Site 498
Cgla.paralog2 ----- - -----  
Xbla.paralog1 ----E S QQGQY Site 498
Ndar.paralog1.duplicate ----E Q QQNQF Site 498
Ndar.paralog2 ----- - -NPES  
Ndar.paralog1 ----H H QQPPF Site 498
Cgla.paralog1 ----D - ---TS  
Xbla.paralog1.duplicate ----E S SQGQY Site 498
Lelo.ancMcm1 NNNIP N QQQYQ Site 498
Xafr.paralog1 ----E S QQNQF Site 498
Xafr.paralog2 ----- - -----  
Ncas.paralog1 ----Q - -QNQV  
ABR.ancMcm1 ---VN S QQGQY Site 498

Generated by PhyloBot at 13:40, November 29th 2020
Questions/Comments? help@phylobot.com