Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 70 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 70 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 70 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 70 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 70
in 'msaprobs'
muscle

The residue for every species at site 70 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Tdel.paralog2 ----HQLFFF H FTRCKA---H Site 65
Clus.ancMcm1 ---------- - -----T---D  
Tdel.paralog1 ---------- - -----E---D  
Kpol.paralog2 ---------- - -----E---S  
Kpol.paralog1 ---------- - -----D---D  
Tpha.paralog1 ---------- - -----IAKPK  
Tpha.paralog2 ---------- - ----------  
Klac.ancMcm1 ---------- - -----E---V  
Cgla.paralog1.duplicate ---------- - -----D---E  
Ncas.Paralog2 ESDRRIAEAP K VPGKIA---A Site 47
Kthe.ancMcm1 ---------- - -----G---V  
Scer.Paralog2 ---------- - -----S---D  
Kwal.ancMcm1 ---------- - -----G---A  
Xafr.paralog1.duplicate ---------- - -----E---E  
Scer.Paralog1 ---------- - -----E---E  
Sbay.paralog1 ---------- - -----E---E  
Ncas.paralog1.duplicate ---------- - -----E---S  
Lklu.ancMcm1 ---------- - -----P---T  
Calb.ancMcm1 ---------- - -----E---E  
Ecym.ancMcm1 ---------- - -----E---K  
Zrou.paralog2 ---------- - -----R---N  
Zrou.paralog1 ---------- - -----D---D  
Xnag.paralog1 ---------- - -----E---L  
Tpha.paralog1.duplicate ---------- - -----E---D  
Xnag.paralog2 RGRSTKGVDS A GSNNSD---A Site 80
Species Residue at Site 70
in 'msaprobs'
muscle

The residue for every species at site 70 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Kpol.paralog1.duplicate ---------- - -----N---D  
Sbay.Paralog2 ---------- - ---------G  
Ylip.ancMcm1 ---------- - -----G---L  
Cgla.paralog2 NLDPDLGKMP G MPGMPG---I Site 47
Xbla.paralog1 ---------- - -----D---D  
Ndar.paralog1.duplicate ---------- - -----E---N  
Ndar.paralog2 EPVEGENEED D YEDEDE---E Site 70
Ndar.paralog1 ---------- - -----N---S  
Cgla.paralog1 ---------- - -----E---D  
Xbla.paralog1.duplicate ---------- - -----E---D  
Lelo.ancMcm1 ---------- - -----G----  
Xafr.paralog1 ---------- - -----D---I  
Xafr.paralog2 ---------- - -----S---G  
Ncas.paralog1 ---------- - -----Q---N  
ABR.ancMcm1 ---------- - -----E---K  

Generated by PhyloBot at 04:27, November 30th 2020
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