Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 667 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 667 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 667 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 667 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 667
in 'msaprobs'
muscle

The residue for every species at site 667 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Tdel.paralog2 ---------- - ----------  
Clus.ancMcm1 GGYND----- - ----------  
Tdel.paralog1 QNAVY----- - ----------  
Kpol.paralog2 ---------- - ----------  
Kpol.paralog1 QNAVY----- - ----------  
Tpha.paralog1 QNAVY----- - ----------  
Tpha.paralog2 --HLE----- - ----------  
Klac.ancMcm1 HAAAY----- - ----------  
Cgla.paralog1.duplicate QNSVY----- - ----------  
Ncas.Paralog2 ---------- - ----------  
Kthe.ancMcm1 QAAVY----- - ----------  
Scer.Paralog2 ---------- - ----------  
Kwal.ancMcm1 ---------- - ----------  
Xafr.paralog1.duplicate ANAFY----- - ----------  
Scer.Paralog1 QNAAY----- - ----------  
Sbay.paralog1 QNAAY----- - ----------  
Ncas.paralog1.duplicate QSAVY----- - ----------  
Lklu.ancMcm1 QAAVY----- - ----------  
Calb.ancMcm1 GGYSD----- - ----------  
Ecym.ancMcm1 QAAVY----- - ----------  
Zrou.paralog2 ---------- - ----------  
Zrou.paralog1 QNAVY----- - ----------  
Xnag.paralog1 TNAVY----- - ----------  
Tpha.paralog1.duplicate QNSVY----- - ----------  
Xnag.paralog2 ---------- - ----------  
Species Residue at Site 667
in 'msaprobs'
muscle

The residue for every species at site 667 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Kpol.paralog1.duplicate QNAVY----- - ----------  
Sbay.Paralog2 ---------- - ----------  
Ylip.ancMcm1 AAQAYQHYLS M PQQQQQQQQQ Site 454
Cgla.paralog2 ---------- - ----------  
Xbla.paralog1 QNAVY----- - ----------  
Ndar.paralog1.duplicate QNAVY----- - ----------  
Ndar.paralog2 ---------- - ----------  
Ndar.paralog1 TYRYY----- - ----------  
Cgla.paralog1 QDPTY----- - ----------  
Xbla.paralog1.duplicate QNSVY----- - ----------  
Lelo.ancMcm1 PGVSY----- - ----------  
Xafr.paralog1 NNAAY----- - ----------  
Xafr.paralog2 ---------- - ----------  
Ncas.paralog1 PNGKY----- - ----------  
ABR.ancMcm1 QAAVN----- - ----------  

Generated by PhyloBot at 14:04, November 29th 2020
Questions/Comments? help@phylobot.com