Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 658 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 658 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 658 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 658 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 658
in 'msaprobs'
muscle

The residue for every species at site 658 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Tdel.paralog2 ---------- - ----------  
Clus.ancMcm1 PM--P--QAG G YND------- Site 462
Tdel.paralog1 SPYLN--PEQ N AVY------- Site 480
Kpol.paralog2 ---------- - ----------  
Kpol.paralog1 QSFLN--QDQ N AVY------- Site 480
Tpha.paralog1 GQYLN--QDQ N AVY------- Site 480
Tpha.paralog2 ---------- - HLE-------  
Klac.ancMcm1 ASYLN--PDH A AAY------- Site 480
Cgla.paralog1.duplicate NHYLN--EEQ N SVY------- Site 480
Ncas.Paralog2 ---------- - ----------  
Kthe.ancMcm1 AAYLS--ADQ A AVY------- Site 480
Scer.Paralog2 ---------- - ----------  
Kwal.ancMcm1 ---------- - ----------  
Xafr.paralog1.duplicate NPYV-----A N AFY------- Site 480
Scer.Paralog1 SPYLN--AEQ N AAY------- Site 480
Sbay.paralog1 SPYLN--AEQ N AAY------- Site 480
Ncas.paralog1.duplicate SPYLN--SEQ S AVY------- Site 480
Lklu.ancMcm1 AAYLN--AEQ A AVY------- Site 480
Calb.ancMcm1 GI--P--LQG G YSD------- Site 473
Ecym.ancMcm1 AAYLN--AEQ A AVY------- Site 480
Zrou.paralog2 ---------- - ----------  
Zrou.paralog1 SPYLN--PEQ N AVY------- Site 480
Xnag.paralog1 HGSAS--GAT N AVY------- Site 480
Tpha.paralog1.duplicate PTQQQ--QQQ N SVY------- Site 480
Xnag.paralog2 ---------- - ----------  
Species Residue at Site 658
in 'msaprobs'
muscle

The residue for every species at site 658 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Kpol.paralog1.duplicate PSYFN--NEQ N AVY------- Site 480
Sbay.Paralog2 ---------- - ----------  
Ylip.ancMcm1 MNYNMNQDSA A QAYQHYLSMP Site 442
Cgla.paralog2 ---------- - ----------  
Xbla.paralog1 NQYLS--SDQ N AVY------- Site 480
Ndar.paralog1.duplicate SPYLN--AEQ N AVY------- Site 480
Ndar.paralog2 ---------- - ----------  
Ndar.paralog1 SNDVN-NQNT Y RYY------- Site 483
Cgla.paralog1 QQYMKGQDHQ D PTY------- Site 465
Xbla.paralog1.duplicate YSYLN--PEQ N SVY------- Site 480
Lelo.ancMcm1 AP--G--GQP G VSY------- Site 480
Xafr.paralog1 QDTKP--TAN N AAY------- Site 480
Xafr.paralog2 ---------- - ----------  
Ncas.paralog1 VAYGKVEDVP N GKY------- Site 480
ABR.ancMcm1 AAYLN--AEQ A AVN------- Site 480

Generated by PhyloBot at 14:18, November 29th 2020
Questions/Comments? help@phylobot.com