Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Select a Site:

Site 656 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 656 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 656 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 656 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 656
in 'msaprobs'
muscle

The residue for every species at site 656 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Tdel.paralog2 ---------- - ----------  
Clus.ancMcm1 GLPM--P--Q A GGYND----- Site 460
Tdel.paralog1 SASPYLN--P E QNAVY----- Site 478
Kpol.paralog2 ---------- - ----------  
Kpol.paralog1 PSQSFLN--Q D QNAVY----- Site 478
Tpha.paralog1 RQGQYLN--Q D QNAVY----- Site 478
Tpha.paralog2 ---------- - --HLE-----  
Klac.ancMcm1 -NASYLN--P D HAAAY----- Site 478
Cgla.paralog1.duplicate QYNHYLN--E E QNSVY----- Site 478
Ncas.Paralog2 ---------- - ----------  
Kthe.ancMcm1 PAAAYLS--A D QAAVY----- Site 478
Scer.Paralog2 ---------- - ----------  
Kwal.ancMcm1 ---------- - ----------  
Xafr.paralog1.duplicate SSNPYV---- - ANAFY-----  
Scer.Paralog1 AASPYLN--A E QNAAY----- Site 478
Sbay.paralog1 AGSPYLN--A E QNAAY----- Site 478
Ncas.paralog1.duplicate VGSPYLN--S E QSAVY----- Site 478
Lklu.ancMcm1 P-AAYLN--A E QAAVY----- Site 478
Calb.ancMcm1 QPGI--P--L Q GGYSD----- Site 471
Ecym.ancMcm1 P-AAYLN--A E QAAVY----- Site 478
Zrou.paralog2 ---------- - ----------  
Zrou.paralog1 TASPYLN--P E QNAVY----- Site 478
Xnag.paralog1 DPHGSAS--G A TNAVY----- Site 478
Tpha.paralog1.duplicate QNPTQQQ--Q Q QNSVY----- Site 478
Xnag.paralog2 ---------- - ----------  
Species Residue at Site 656
in 'msaprobs'
muscle

The residue for every species at site 656 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Kpol.paralog1.duplicate ASPSYFN--N E QNAVY----- Site 478
Sbay.Paralog2 ---------- - ----------  
Ylip.ancMcm1 PGMNYNMNQD S AAQAYQHYLS Site 440
Cgla.paralog2 ---------- - ----------  
Xbla.paralog1 LANQYLS--S D QNAVY----- Site 478
Ndar.paralog1.duplicate TNSPYLN--A E QNAVY----- Site 478
Ndar.paralog2 ---------- - ----------  
Ndar.paralog1 NRSNDVN-NQ N TYRYY----- Site 467
Cgla.paralog1 MGQQYMKGQD H QDPTY----- Site 463
Xbla.paralog1.duplicate QQYSYLN--P E QNSVY----- Site 478
Lelo.ancMcm1 GGAP--G--G Q PGVSY----- Site 478
Xafr.paralog1 QQQDTKP--T A NNAAY----- Site 478
Xafr.paralog2 ---------- - ----------  
Ncas.paralog1 QKVAYGKVED V PNGKY----- Site 478
ABR.ancMcm1 P-AAYLN--A E QAAVN----- Site 478

Generated by PhyloBot at 04:41, November 30th 2020
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