Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Site 629 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 629 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 629 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 629 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 629
in 'msaprobs'
muscle

The residue for every species at site 629 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Tdel.paralog2 ---------- - ----------  
Clus.ancMcm1 QLPPAHMPHG M PYQGQG---- Site 440
Tdel.paralog1 QQNPHQPHPG M PHPHLQ---- Site 455
Kpol.paralog2 ---------- - ----------  
Kpol.paralog1 QNIAQHQGIS L QHPNPQ---- Site 455
Tpha.paralog1 QYQAQQLSQQ R QQQQLQ---- Site 453
Tpha.paralog2 ---------- - ----------  
Klac.ancMcm1 QQQQQPQSVQ H QQPQVQGTGQ Site 455
Cgla.paralog1.duplicate EMNGQGGAPG F ANGQDMHLQQ Site 448
Ncas.Paralog2 ---------- - ----------  
Kthe.ancMcm1 PHQQQQQQQP P QAAAAA---- Site 455
Scer.Paralog2 ---------- - ----------  
Kwal.ancMcm1 ---------- - ----------  
Xafr.paralog1.duplicate AQNEQNMAQT G MIPQRQ---- Site 454
Scer.Paralog1 QQQQQQPLTG I HQPHQQ---- Site 455
Sbay.paralog1 QQQPQQPLTG I HQPHQQ---- Site 455
Ncas.paralog1.duplicate QQQQQQNALV Q QFQNAQ---- Site 455
Lklu.ancMcm1 NPVVQNPQGA S VQQQPQ---- Site 455
Calb.ancMcm1 HYSNPQGAGN P GVPPQQ---- Site 454
Ecym.ancMcm1 AAAVAAHHQQ L PPQQQQ---- Site 455
Zrou.paralog2 ---------- - ----------  
Zrou.paralog1 HTAHQPHPVM P PPPHQQ---- Site 455
Xnag.paralog1 QGIPAPQQQQ Q QQQPHD---- Site 459
Tpha.paralog1.duplicate QVPFSNVNIQ P PIPNNQ---- Site 450
Xnag.paralog2 ---------- - ----------  
Species Residue at Site 629
in 'msaprobs'
muscle

The residue for every species at site 629 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Kpol.paralog1.duplicate QPQPQHGNTI N VPPNVQ---- Site 455
Sbay.Paralog2 ---------- - ----------  
Ylip.ancMcm1 PDQLVEDQLG G HPGLARGPPP Site 319
Cgla.paralog2 ---------- - ----------  
Xbla.paralog1 QMMQGHPEMQ G NPNQQQ---- Site 455
Ndar.paralog1.duplicate QQQQGNPATS H HYQHGQ---- Site 455
Ndar.paralog2 ---------- - ----------  
Ndar.paralog1 QAHLDPETYS V PANQQP---- Site 444
Cgla.paralog1 TLDHQALPQN H NPYPNI---- Site 410
Xbla.paralog1.duplicate NLPPHLQQQQ Q QPLPPMNQQQ Site 449
Lelo.ancMcm1 QQPAPPGHPQ Q QPPQQQ---- Site 461
Xafr.paralog1 QQHPFTIDGF A NPKVNT---- Site 449
Xafr.paralog2 ---------- - ----------  
Ncas.paralog1 GLPNPVTDLF N LPTNDQ---- Site 448
ABR.ancMcm1 HHAVAAHHHQ L SPQQQQ---- Site 455

Generated by PhyloBot at 14:08, November 29th 2020
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