Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 608 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 608 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 608 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 608 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 608
in 'msaprobs'
muscle

The residue for every species at site 608 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Tdel.paralog2 ---------- - ----------  
Clus.ancMcm1 PQVPAQHQHQ A AAHQQQQQQQ Site 366
Tdel.paralog1 PAMNPGHGIP A GVPSAPMGMP Site 417
Kpol.paralog2 ---------- - ----------  
Kpol.paralog1 TNNNLIPQAG I NQAAMNSIPN Site 401
Tpha.paralog1 LLGVKEDIAG Q HHGRLPIPQE Site 402
Tpha.paralog2 ---------- - ----------  
Klac.ancMcm1 QQQQQQQQQQ R LALQQQGQNS Site 404
Cgla.paralog1.duplicate QHMQVHQEQV A YSHDDKGHVP Site 397
Ncas.Paralog2 ---------- - ----------  
Kthe.ancMcm1 QQQQQVQQHA H AHAHAHAQQH Site 404
Scer.Paralog2 ---------- - ----------  
Kwal.ancMcm1 ---------- - ----------  
Xafr.paralog1.duplicate PNVSSNLTIQ Q PAQPQRQQYN Site 397
Scer.Paralog1 HPQQSQPQQQ Q QQQQQLQQQQ Site 434
Sbay.paralog1 QMPQHPQPQQ G IPHPQQSQQQ Site 418
Ncas.paralog1.duplicate GTFPNQYQHP Q QHPQQQHGQQ Site 404
Lklu.ancMcm1 AAAGGVAADP S TGAIPHPQAG Site 363
Calb.ancMcm1 QQAQQQAQQQ M APMPSHGLPT Site 403
Ecym.ancMcm1 AHSVAAGAAA H HHHHHHHHAA Site 398
Zrou.paralog2 ---------- - ----------  
Zrou.paralog1 MKAAHAMQGH E GAPTMPIPTQ Site 404
Xnag.paralog1 GGPGNPGTGS I QQQGIPQQQQ Site 434
Tpha.paralog1.duplicate ILNNNNSANY M SVQQIQQPLK Site 399
Xnag.paralog2 ---------- - ----------  
Species Residue at Site 608
in 'msaprobs'
muscle

The residue for every species at site 608 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Kpol.paralog1.duplicate QPNLQSQQNG P NSGLIPTQGM Site 404
Sbay.Paralog2 ---------- - ----------  
Ylip.ancMcm1 GSHVNSQANG P GGSQVAGGEL Site 294
Cgla.paralog2 ---------- - ----------  
Xbla.paralog1 QQAQAQHAQA Q QAQAQQQSHQ Site 434
Ndar.paralog1.duplicate TTQQQQQEQQ Q QHIQQQRQQQ Site 404
Ndar.paralog2 ---------- - ----------  
Ndar.paralog1 ISPDTDNIHP D ANVTYSNEAP Site 364
Cgla.paralog1 LDNQQQLQNQ N LLQQPQHSNQ Site 366
Xbla.paralog1.duplicate YQQQQQQQQQ Q QSQMQMQPGS Site 402
Lelo.ancMcm1 QVHQQQYPPQ P QTQAYPGQQP Site 410
Xafr.paralog1 QAHAHAQQVQ Q MQQQVQQHQL Site 398
Xafr.paralog2 ---------- - ----------  
Ncas.paralog1 QSNLISQAYH P NQIQSQIQQL Site 397
ABR.ancMcm1 DVGVPADHVA A AHSVAAATAH Site 367

Generated by PhyloBot at 14:15, November 29th 2020
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