Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Site 578 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 578 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 578 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 578 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 578
in 'msaprobs'
muscle

The residue for every species at site 578 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Tdel.paralog2 ---------- - ----------  
Clus.ancMcm1 --QS------ - --------PA  
Tdel.paralog1 -QI--QQQNQ P QQLLNNPLKQ Site 364
Kpol.paralog2 ---------- - ----------  
Kpol.paralog1 -VQ--QGQQS N GVLGDSQQDM Site 309
Tpha.paralog1 ---------- - ----------  
Tpha.paralog2 ---------- - ----------  
Klac.ancMcm1 VPT--SVQLP G GGHSHGLLPQ Site 312
Cgla.paralog1.duplicate QPQ--NQHQE Q IAEQNKQPHT Site 286
Ncas.Paralog2 ---------- - ----------  
Kthe.ancMcm1 -AA--KLPSA H QQVPMAGAPP Site 303
Scer.Paralog2 ---------- - ----------  
Kwal.ancMcm1 ---------- - ----------  
Xafr.paralog1.duplicate ---------- - ---SSNLFGK  
Scer.Paralog1 QQQ--QQQQP Q QQMSQQQMSQ Site 404
Sbay.paralog1 HAQ--NPQTQ Q PQQQQQQQQQ Site 365
Ncas.paralog1.duplicate NSP--LNQSE I KTEMKPTVTL Site 374
Lklu.ancMcm1 ---------- - -------EDK  
Calb.ancMcm1 --QSPAPATN P NVMGAAGHAH Site 298
Ecym.ancMcm1 -GP--NAVQD A SGNPNAVNVG Site 300
Zrou.paralog2 ---------- - ----------  
Zrou.paralog1 QPT--HVPNT A GLGPHPHELH Site 315
Xnag.paralog1 ---------- - ----------  
Tpha.paralog1.duplicate ---------- - ----------  
Xnag.paralog2 ---------- - ----------  
Species Residue at Site 578
in 'msaprobs'
muscle

The residue for every species at site 578 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Kpol.paralog1.duplicate ---------- - ---PNNGQYN  
Sbay.Paralog2 ---------- - ----------  
Ylip.ancMcm1 ---------- - ---------Q  
Cgla.paralog2 ---------- - ----------  
Xbla.paralog1 PMQ--QQPQQ Q QQPQQPIGGM Site 404
Ndar.paralog1.duplicate TIG--QTSVV S SSGTLGNQFS Site 351
Ndar.paralog2 ---------- - ----------  
Ndar.paralog1 ---------- - ----------  
Cgla.paralog1 --G--NPDLG S NSQTDLPHHL Site 294
Xbla.paralog1.duplicate LPQ--NQIRN Q NIPQQSQNSA Site 327
Lelo.ancMcm1 AQQQAQQQHA Q LQHQQQQAAA Site 325
Xafr.paralog1 ---------- - ----------  
Xafr.paralog2 ---------- - ----------  
Ncas.paralog1 --V--DNINI D PRNHDNMVNV Site 293
ABR.ancMcm1 --------VS V GGVAGPNAVQ Site 288

Generated by PhyloBot at 13:13, November 29th 2020
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