Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Site 576 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 576 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 576 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 576 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 576
in 'msaprobs'
muscle

The residue for every species at site 576 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Tdel.paralog2 ---------- - ----------  
Clus.ancMcm1 ----QS---- - ----------  
Tdel.paralog1 ---QI--QQQ N QPQQLLNNPL Site 323
Kpol.paralog2 ---------- - ----------  
Kpol.paralog1 ---VQ--QGQ Q SNGVLGDSQQ Site 303
Tpha.paralog1 ---------- - ----------  
Tpha.paralog2 ---------- - ----------  
Klac.ancMcm1 STVPT--SVQ L PGGGHSHGLL Site 310
Cgla.paralog1.duplicate GQQPQ--NQH Q EQIAEQNKQP Site 284
Ncas.Paralog2 ---------- - ----------  
Kthe.ancMcm1 ---AA--KLP S AHQQVPMAGA Site 301
Scer.Paralog2 ---------- - ----------  
Kwal.ancMcm1 ---------- - ----------  
Xafr.paralog1.duplicate ---------- - -----SSNLF  
Scer.Paralog1 QPQQQ--QQQ Q PQQQMSQQQM Site 402
Sbay.paralog1 QHHAQ--NPQ T QQPQQQQQQQ Site 363
Ncas.paralog1.duplicate NNNSP--LNQ S EIKTEMKPTV Site 372
Lklu.ancMcm1 ---------- - ---------E  
Calb.ancMcm1 ----QSPAPA T NPNVMGAAGH Site 296
Ecym.ancMcm1 ---GP--NAV Q DASGNPNAVN Site 298
Zrou.paralog2 ---------- - ----------  
Zrou.paralog1 AGQPT--HVP N TAGLGPHPHE Site 313
Xnag.paralog1 ---------- - ----------  
Tpha.paralog1.duplicate ---------- - ----------  
Xnag.paralog2 ---------- - ----------  
Species Residue at Site 576
in 'msaprobs'
muscle

The residue for every species at site 576 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Kpol.paralog1.duplicate ---------- - -----PNNGQ  
Sbay.Paralog2 ---------- - ----------  
Ylip.ancMcm1 ---------- - ----------  
Cgla.paralog2 ---------- - ----------  
Xbla.paralog1 GNPMQ--QQP Q QQQQPQQPIG Site 402
Ndar.paralog1.duplicate NMTIG--QTS V VSSSGTLGNQ Site 349
Ndar.paralog2 ---------- - ----------  
Ndar.paralog1 ---------- - ----------  
Cgla.paralog1 ----G--NPD L GSNSQTDLPH Site 292
Xbla.paralog1.duplicate QQLPQ--NQI R NQNIPQQSQN Site 325
Lelo.ancMcm1 HQAQQQAQQQ H AQLQHQQQQA Site 323
Xafr.paralog1 ---------- - ----------  
Xafr.paralog2 ---------- - ----------  
Ncas.paralog1 ----V--DNI N IDPRNHDNMV Site 291
ABR.ancMcm1 ---------- V SVGGVAGPNA Site 286

Generated by PhyloBot at 05:35, November 30th 2020
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