Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Site 567 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 567 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 567 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 567 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 567
in 'msaprobs'
muscle

The residue for every species at site 567 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Tdel.paralog2 ---------- - ----------  
Clus.ancMcm1 ---------- - --QS------  
Tdel.paralog1 ---------- - -QI--QQQNQ  
Kpol.paralog2 ---------- - ----------  
Kpol.paralog1 ---------- - -VQ--QGQQS  
Tpha.paralog1 ---------- - ----------  
Tpha.paralog2 ---------- - ----------  
Klac.ancMcm1 GGDVGGQPHS T VPT--SVQLP Site 299
Cgla.paralog1.duplicate ------MQQG Q QPQ--NQHQE Site 259
Ncas.Paralog2 ---------- - ----------  
Kthe.ancMcm1 ---------- - -AA--KLPSA  
Scer.Paralog2 ---------- - ----------  
Kwal.ancMcm1 ---------- - ----------  
Xafr.paralog1.duplicate ---------- - ----------  
Scer.Paralog1 QQQHHTQNSQ P QQQ--QQQQP Site 372
Sbay.paralog1 PNQTPIIQQQ H HAQ--NPQTQ Site 348
Ncas.paralog1.duplicate HSSILNNNNN N NSP--LNQSE Site 365
Lklu.ancMcm1 ---------- - ----------  
Calb.ancMcm1 ---------- - --QSPAPATN  
Ecym.ancMcm1 ---------- - -GP--NAVQD  
Zrou.paralog2 ---------- - ----------  
Zrou.paralog1 AAAAAAAQMA G QPT--HVPNT Site 302
Xnag.paralog1 ---------- - ----------  
Tpha.paralog1.duplicate ---------- - ----------  
Xnag.paralog2 ---------- - ----------  
Species Residue at Site 567
in 'msaprobs'
muscle

The residue for every species at site 567 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Kpol.paralog1.duplicate ---------- - ----------  
Sbay.Paralog2 ---------- - ----------  
Ylip.ancMcm1 ---------- - ----------  
Cgla.paralog2 ---------- - ----------  
Xbla.paralog1 MQQHMAQQQG N PMQ--QQPQQ Site 395
Ndar.paralog1.duplicate GMKREGNSNN M TIG--QTSVV Site 342
Ndar.paralog2 ---------- - ----------  
Ndar.paralog1 ---------- - ----------  
Cgla.paralog1 ---------- - --G--NPDLG  
Xbla.paralog1.duplicate PQQIPQQIPQ Q LPQ--NQIRN Site 318
Lelo.ancMcm1 PPHLPHHVQH Q AQQQAQQQHA Site 314
Xafr.paralog1 ---------- - ----------  
Xafr.paralog2 ---------- - ----------  
Ncas.paralog1 ---------- - --V--DNINI  
ABR.ancMcm1 ---------- - --------VS  

Generated by PhyloBot at 12:40, November 29th 2020
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