Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Select a Site:

Site 566 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 566 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 566 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 566 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 566
in 'msaprobs'
muscle

The residue for every species at site 566 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Tdel.paralog2 ---------- - ----------  
Clus.ancMcm1 ---------- - ---QS-----  
Tdel.paralog1 ---------- - --QI--QQQN  
Kpol.paralog2 ---------- - ----------  
Kpol.paralog1 ---------- - --VQ--QGQQ  
Tpha.paralog1 ---------- - ----------  
Tpha.paralog2 ---------- - ----------  
Klac.ancMcm1 HGGDVGGQPH S TVPT--SVQL Site 298
Cgla.paralog1.duplicate -------MQQ G QQPQ--NQHQ Site 258
Ncas.Paralog2 ---------- - ----------  
Kthe.ancMcm1 ---------- - --AA--KLPS  
Scer.Paralog2 ---------- - ----------  
Kwal.ancMcm1 ---------- - ----------  
Xafr.paralog1.duplicate ---------- - ----------  
Scer.Paralog1 QQQQHHTQNS Q PQQQ--QQQQ Site 371
Sbay.paralog1 NPNQTPIIQQ Q HHAQ--NPQT Site 347
Ncas.paralog1.duplicate VHSSILNNNN N NNSP--LNQS Site 364
Lklu.ancMcm1 ---------- - ----------  
Calb.ancMcm1 ---------- - ---QSPAPAT  
Ecym.ancMcm1 ---------- - --GP--NAVQ  
Zrou.paralog2 ---------- - ----------  
Zrou.paralog1 AAAAAAAAQM A GQPT--HVPN Site 301
Xnag.paralog1 ---------- - ----------  
Tpha.paralog1.duplicate ---------- - ----------  
Xnag.paralog2 ---------- - ----------  
Species Residue at Site 566
in 'msaprobs'
muscle

The residue for every species at site 566 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Kpol.paralog1.duplicate ---------- - ----------  
Sbay.Paralog2 ---------- - ----------  
Ylip.ancMcm1 ---------- - ----------  
Cgla.paralog2 ---------- - ----------  
Xbla.paralog1 AMQQHMAQQQ G NPMQ--QQPQ Site 394
Ndar.paralog1.duplicate VGMKREGNSN N MTIG--QTSV Site 341
Ndar.paralog2 ---------- - ----------  
Ndar.paralog1 ---------- - ----------  
Cgla.paralog1 ---------- - ---G--NPDL  
Xbla.paralog1.duplicate IPQQIPQQIP Q QLPQ--NQIR Site 317
Lelo.ancMcm1 QPPHLPHHVQ H QAQQQAQQQH Site 313
Xafr.paralog1 ---------- - ----------  
Xafr.paralog2 ---------- - ----------  
Ncas.paralog1 ---------- - ---V--DNIN  
ABR.ancMcm1 ---------- - ---------V  

Generated by PhyloBot at 04:21, November 30th 2020
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