Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Select a Site:

Site 503 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 503 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 503 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 503 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 503
in 'msaprobs'
muscle

The residue for every species at site 503 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Tdel.paralog2 ---------- - ----------  
Clus.ancMcm1 -D-------- - ----------  
Tdel.paralog1 QQ-------- - ----------  
Kpol.paralog2 ---------- - ----------  
Kpol.paralog1 QQ-------- - ----------  
Tpha.paralog1 ---------- - ----------  
Tpha.paralog2 ---------- - ----------  
Klac.ancMcm1 ---------- - ----------  
Cgla.paralog1.duplicate ---------- - ----------  
Ncas.Paralog2 ---------- - ----------  
Kthe.ancMcm1 -D-------- - ----------  
Scer.Paralog2 ---------- - ----------  
Kwal.ancMcm1 ---------- - ----------  
Xafr.paralog1.duplicate -D-------- - ----------  
Scer.Paralog1 -DGNDMQRQQ P QQQQPQQQQQ Site 288
Sbay.paralog1 -DG-----ND M QRQQQQQQQQ Site 279
Ncas.paralog1.duplicate NNNTNSNMTS H NNIHNNINGV Site 297
Lklu.ancMcm1 ---------- - ----------  
Calb.ancMcm1 -D-------- - ----------  
Ecym.ancMcm1 VA-------- - ----------  
Zrou.paralog2 ---------- - ----------  
Zrou.paralog1 ---------- - ----------  
Xnag.paralog1 ---------- - ----------  
Tpha.paralog1.duplicate ---------- - ----------  
Xnag.paralog2 ---------- - ----------  
Species Residue at Site 503
in 'msaprobs'
muscle

The residue for every species at site 503 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Kpol.paralog1.duplicate -I-------- - ----------  
Sbay.Paralog2 ---------- - ----------  
Ylip.ancMcm1 ---------- - ----------  
Cgla.paralog2 ---------- - ----------  
Xbla.paralog1 IPTSVGEHLQ N QLQKTADNGI Site 331
Ndar.paralog1.duplicate NQGAEILGSS I TEQDPSARHN Site 274
Ndar.paralog2 ---------- - ----------  
Ndar.paralog1 ---------- - ----------  
Cgla.paralog1 -N-------- - ----------  
Xbla.paralog1.duplicate ---------- - --------SK  
Lelo.ancMcm1 -E-------- - ----------  
Xafr.paralog1 ---------- - ----------  
Xafr.paralog2 ---------- - ----------  
Ncas.paralog1 -S-------- - ----------  
ABR.ancMcm1 ---------- - ----------  

Generated by PhyloBot at 04:46, November 30th 2020
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