Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Site 457 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 457 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 457 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 457 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 457
in 'msaprobs'
muscle

The residue for every species at site 457 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Tdel.paralog2 ---------- - ----------  
Clus.ancMcm1 ---------- - --S-------  
Tdel.paralog1 ---------- - --NDSSNQVS  
Kpol.paralog2 ---------- - ----------  
Kpol.paralog1 ---------- - ----------  
Tpha.paralog1 QMQAPQQQVQ Q QQA------- Site 313
Tpha.paralog2 ---------- - ----------  
Klac.ancMcm1 ---------- - --E-------  
Cgla.paralog1.duplicate ---------- - ----------  
Ncas.Paralog2 ---------- - ----------  
Kthe.ancMcm1 ---------- - --D-------  
Scer.Paralog2 ---------- - ----------  
Kwal.ancMcm1 ---------- - ----------  
Xafr.paralog1.duplicate ---------- - --F-------  
Scer.Paralog1 ---------- - ----------  
Sbay.paralog1 ---------- - ----------  
Ncas.paralog1.duplicate ---------- - ----------  
Lklu.ancMcm1 ---------- - ----------  
Calb.ancMcm1 ---------- - --S-------  
Ecym.ancMcm1 ---------- - --E-------  
Zrou.paralog2 ---------- - ----------  
Zrou.paralog1 ---------- - ----------  
Xnag.paralog1 GDHPHAFSMD G FGN------- Site 411
Tpha.paralog1.duplicate QQQPPQLQQH Q QHP------- Site 315
Xnag.paralog2 ---------- - ----------  
Species Residue at Site 457
in 'msaprobs'
muscle

The residue for every species at site 457 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Kpol.paralog1.duplicate LIPNIKQDND I DSR------- Site 313
Sbay.Paralog2 ---------- - ----------  
Ylip.ancMcm1 ---------- - ----------  
Cgla.paralog2 ---------- - ----------  
Xbla.paralog1 ---------- - ----------  
Ndar.paralog1.duplicate ---------- - ----------  
Ndar.paralog2 ---------- - ----------  
Ndar.paralog1 ---------- - --T-------  
Cgla.paralog1 ---------- - --T-------  
Xbla.paralog1.duplicate ---------- - ----------  
Lelo.ancMcm1 ---------- - --S-------  
Xafr.paralog1 --QQQQVQQQ V QND------- Site 300
Xafr.paralog2 ---------- - ----------  
Ncas.paralog1 ---------- - --A-------  
ABR.ancMcm1 ---------- - --E-------  

Generated by PhyloBot at 13:49, November 29th 2020
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