Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Select a Site:

Site 443 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 443 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 443 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 443 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 443
in 'msaprobs'
muscle

The residue for every species at site 443 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Tdel.paralog2 ---------- - ----------  
Clus.ancMcm1 ---------- - ----------  
Tdel.paralog1 ---------- - ----------  
Kpol.paralog2 ---------- - ----------  
Kpol.paralog1 ---------- - ----------  
Tpha.paralog1 ---AEAGAPG P AVQQMQAPQQ Site 295
Tpha.paralog2 ---------- - ----------  
Klac.ancMcm1 ---------- - ----------  
Cgla.paralog1.duplicate ---------- - ----------  
Ncas.Paralog2 ---------- - ----------  
Kthe.ancMcm1 ---------- - ----------  
Scer.Paralog2 ---------- - ----------  
Kwal.ancMcm1 ---------- - ----------  
Xafr.paralog1.duplicate ---------- - ----------  
Scer.Paralog1 ---------- - ----------  
Sbay.paralog1 ---------- - ----------  
Ncas.paralog1.duplicate ---------- - ----------  
Lklu.ancMcm1 ---------- - ----------  
Calb.ancMcm1 ---------- - ----------  
Ecym.ancMcm1 ---------- - ----------  
Zrou.paralog2 ---------- - ----------  
Zrou.paralog1 ---------- - ----------  
Xnag.paralog1 MGQPPHLHQL P PVAGDHPHAF Site 397
Tpha.paralog1.duplicate QQDQQQKQQQ S PQMQQQPPQL Site 297
Xnag.paralog2 ---------- - ----------  
Species Residue at Site 443
in 'msaprobs'
muscle

The residue for every species at site 443 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Kpol.paralog1.duplicate GSLIQQQGHL Q SNQLIPNIKQ Site 295
Sbay.Paralog2 ---------- - ----------  
Ylip.ancMcm1 ---------- - ----------  
Cgla.paralog2 ---------- - ----------  
Xbla.paralog1 ---------- - ----------  
Ndar.paralog1.duplicate ---------- - ----------  
Ndar.paralog2 ---------- - ----------  
Ndar.paralog1 ---------- - ----------  
Cgla.paralog1 ---------- - ----------  
Xbla.paralog1.duplicate ---------- - ----------  
Lelo.ancMcm1 ---------- - ----------  
Xafr.paralog1 ---------- - -----QQQQV  
Xafr.paralog2 ---------- - ----------  
Ncas.paralog1 ---------- - ----------  
ABR.ancMcm1 ---------- - ----------  

Generated by PhyloBot at 12:58, November 29th 2020
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