Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Select a Site:

Site 429 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 429 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 429 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 429 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 429
in 'msaprobs'
muscle

The residue for every species at site 429 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Tdel.paralog2 ---------- - ----------  
Clus.ancMcm1 ---------- - ----------  
Tdel.paralog1 ---------- - ----------  
Kpol.paralog2 ---------- - ----------  
Kpol.paralog1 ---------- - ----------  
Tpha.paralog1 ---------- - ------AEAG  
Tpha.paralog2 ---------- - ----------  
Klac.ancMcm1 ---------- - ----------  
Cgla.paralog1.duplicate ---------- - ----------  
Ncas.Paralog2 ---------- - ----------  
Kthe.ancMcm1 ---------- - ----------  
Scer.Paralog2 ---------- - ----------  
Kwal.ancMcm1 ---------- - ----------  
Xafr.paralog1.duplicate ---------- - ----------  
Scer.Paralog1 ---------- - ----------  
Sbay.paralog1 ---------- - ----------  
Ncas.paralog1.duplicate ---------- - ----------  
Lklu.ancMcm1 ---------- - ----------  
Calb.ancMcm1 ---------- - ----------  
Ecym.ancMcm1 ---------- - ----------  
Zrou.paralog2 ---------- - ----------  
Zrou.paralog1 ---------- - ----------  
Xnag.paralog1 QQHQQMQMQQ V PQQMGQPPHL Site 324
Tpha.paralog1.duplicate LIQQQQQQQQ Q QQLQQDQQQK Site 283
Xnag.paralog2 ---------- - ----------  
Species Residue at Site 429
in 'msaprobs'
muscle

The residue for every species at site 429 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Kpol.paralog1.duplicate TNNNENVNSN P NNAGSLIQQQ Site 281
Sbay.Paralog2 ---------- - ----------  
Ylip.ancMcm1 ---------- - ----------  
Cgla.paralog2 ---------- - ----------  
Xbla.paralog1 ---------- - ----------  
Ndar.paralog1.duplicate ---------- - ----------  
Ndar.paralog2 ---------- - ----------  
Ndar.paralog1 ---------- - ----------  
Cgla.paralog1 ---------- - ----------  
Xbla.paralog1.duplicate ---------- - ----------  
Lelo.ancMcm1 ---------- - ----------  
Xafr.paralog1 ---------- - ----------  
Xafr.paralog2 ---------- - ----------  
Ncas.paralog1 ---------- - ----------  
ABR.ancMcm1 ---------- - ----------  

Generated by PhyloBot at 04:20, November 30th 2020
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