Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 350 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 350 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 350 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 350 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 350
in 'msaprobs'
muscle

The residue for every species at site 350 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Tdel.paralog2 ---------- - ----------  
Clus.ancMcm1 SDGNS----- - ----------  
Tdel.paralog1 EDARE----- - ----------  
Kpol.paralog2 ---------- - ----------  
Kpol.paralog1 QQPQQ----- - ----------  
Tpha.paralog1 HDND------ - ----------  
Tpha.paralog2 ---------- - ----------  
Klac.ancMcm1 EDEDE----- - ----------  
Cgla.paralog1.duplicate DTS------- - ----------  
Ncas.Paralog2 ---------- - ----------  
Kthe.ancMcm1 DDEDA----- - ----------  
Scer.Paralog2 QE-------- - ----------  
Kwal.ancMcm1 ---------- - ----------  
Xafr.paralog1.duplicate SNLNK----- - ----------  
Scer.Paralog1 DDDDD----- - ----------  
Sbay.paralog1 DDDDE----- - ----------  
Ncas.paralog1.duplicate GEGDD----- - ----------  
Lklu.ancMcm1 DEEEE----- - ----------  
Calb.ancMcm1 SDGNT----- - ----------  
Ecym.ancMcm1 DDEEI----- - ----------  
Zrou.paralog2 ---------- - ----------  
Zrou.paralog1 EAPED----- - ----------  
Xnag.paralog1 DEEAQ----- - ----------  
Tpha.paralog1.duplicate KHENG----- - ----------  
Xnag.paralog2 ---------- - ----------  
Species Residue at Site 350
in 'msaprobs'
muscle

The residue for every species at site 350 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Kpol.paralog1.duplicate QHINA----- - ----------  
Sbay.Paralog2 ---------- - ----------  
Ylip.ancMcm1 DAR------- - ----------  
Cgla.paralog2 ---------- - ----------  
Xbla.paralog1 NDGEQQNVIQ A NEQAQMGQIT Site 264
Ndar.paralog1.duplicate EEEDN----- - ----------  
Ndar.paralog2 ---------- - ----------  
Ndar.paralog1 PENEG----- - ----------  
Cgla.paralog1 QDEDH----- - ----------  
Xbla.paralog1.duplicate GDMGP----- - ----------  
Lelo.ancMcm1 SDGAE----- - ----------  
Xafr.paralog1 VQQ------- - ----------  
Xafr.paralog2 ---------- - ----------  
Ncas.paralog1 EEEDV----- - ----------  
ABR.ancMcm1 DEV------- - ----------  

Generated by PhyloBot at 14:09, November 29th 2020
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