Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 330 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 330 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 330 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 330 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 330
in 'msaprobs'
muscle

The residue for every species at site 330 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Tdel.paralog2 QCLQEETMG- - ----------  
Clus.ancMcm1 ACLNAPEEGL G DDQ---GDQS Site 242
Tdel.paralog1 ACLNAPDDDE E EEE---EEDE Site 242
Kpol.paralog2 NCLKKEDS-- - ----------  
Kpol.paralog1 ACLNAPDEEE E EEN---DDQQ Site 245
Tpha.paralog1 ACLNAPDEEE E LEQ---EMEH Site 245
Tpha.paralog2 KCLQEESPKA I ETK---KH-- Site 451
Klac.ancMcm1 ACLNAPEEDD E DDD---DEEE Site 242
Cgla.paralog1.duplicate ACLNAPDDDE E EEE---EEFD Site 245
Ncas.Paralog2 ACLNGPDGDS A AIFYPPN--- Site 452
Kthe.ancMcm1 ACLNAPEEDE D AEE---EEDD Site 245
Scer.Paralog2 ACINASDTPD A TDT---SPAQ Site 452
Kwal.ancMcm1 RVSTR----- - ----------  
Xafr.paralog1.duplicate ACLSAPDQLS D DDE---KDGS Site 242
Scer.Paralog1 ACLNAPDDEE E DEE---EDGD Site 242
Sbay.paralog1 ACLNAPDDEE E DDE---EDGD Site 242
Ncas.paralog1.duplicate ACLNAPDDED E EEE---DEDG Site 245
Lklu.ancMcm1 ACLNAPDEEE E EEE---EDDD Site 242
Calb.ancMcm1 ACLNAPEEGL G DDQ---ENQS Site 242
Ecym.ancMcm1 ACLNAPEEEE E DED---EEDD Site 242
Zrou.paralog2 KCLDGRPTP- - ----------  
Zrou.paralog1 ACLNAPDDDE D DDE---EEEE Site 242
Xnag.paralog1 ACLNAPDDDD E EEE---EADD Site 245
Tpha.paralog1.duplicate ACLNAPDEEE E EEE---ETNK Site 245
Xnag.paralog2 KCLNAGEAG- - ----------  
Species Residue at Site 330
in 'msaprobs'
muscle

The residue for every species at site 330 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Kpol.paralog1.duplicate ACLNAPDEEE E EEE---NDHQ Site 245
Sbay.Paralog2 ACINAPDAPP T HDQ---P--- Site 458
Ylip.ancMcm1 ACLNASDDVP V AAA---ESQD Site 242
Cgla.paralog2 RCLNQDNST- - ----------  
Xbla.paralog1 ACLNAPDDDD D DDG---NNNN Site 245
Ndar.paralog1.duplicate ACLNAPDEEE E EEE---EEGE Site 245
Ndar.paralog2 KCLGAPDNWE Y DEG---TRA- Site 242
Ndar.paralog1 ACLNVPDEEE E EEE---DEDP Site 245
Cgla.paralog1 ACLNAPDEDG E EDD---EEEQ Site 242
Xbla.paralog1.duplicate ACLNAPDDDD D TNA---AASG Site 245
Lelo.ancMcm1 ACLNAPEEGL N DDA---GEQS Site 242
Xafr.paralog1 ACLNAPDEEE E EED---DQQV Site 245
Xafr.paralog2 ACLNAEDN-- - ----------  
Ncas.paralog1 ACLNAPDEDE E EEE---EGDE Site 245
ABR.ancMcm1 ACLNAPEEEE E DED---EDED Site 242

Generated by PhyloBot at 13:45, November 29th 2020
Questions/Comments? help@phylobot.com