Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 316 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 316 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 316 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 316 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 316
in 'msaprobs'
muscle

The residue for every species at site 316 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Tdel.paralog2 ERIVREQEGK R LIRQCLQEET Site 228
Clus.ancMcm1 QPLVTKSEGK N LIQACLNAPE Site 228
Tdel.paralog1 EPIVTQQEGR N LIQACLNAPD Site 228
Kpol.paralog2 RRFIEENEGK S LVRNCLKKED Site 228
Kpol.paralog1 EPIVTQQEGR N LIQACLNAPD Site 228
Tpha.paralog1 EPIVTQQEGR N LIQACLNAPD Site 228
Tpha.paralog2 RNFVNCNEGQ K LIRKCLQEES Site 228
Klac.ancMcm1 QPIVTQPEGK N LIQACLNAPE Site 228
Cgla.paralog1.duplicate EPIVTQQEGR N LIQACLNAPD Site 228
Ncas.Paralog2 EPVIRDEEGK G LIRACLNGPD Site 228
Kthe.ancMcm1 QPIVTQPEGK N LIQACLNAPE Site 228
Scer.Paralog2 EPVVREDEGK S LIRACINASD Site 228
Kwal.ancMcm1 QPIVTQPEGK N LSRRVSTR-- Site 228
Xafr.paralog1.duplicate EPIVTQPEGR N LIQACLSAPD Site 228
Scer.Paralog1 EPIVTQQEGR N LIQACLNAPD Site 228
Sbay.paralog1 EPIVTQQEGR N LIQACLNAPD Site 228
Ncas.paralog1.duplicate EPIVTQQEGR N LIQACLNAPD Site 228
Lklu.ancMcm1 QPIVKEPEGR N LIQACLNAPD Site 228
Calb.ancMcm1 QPLVTKSEGK N LIQACLNAPE Site 228
Ecym.ancMcm1 QPIVTQPEGK N LIQACLNAPE Site 228
Zrou.paralog2 EPVVREREGK E LVWKCLDGRP Site 228
Zrou.paralog1 EPIVTQQEGR N LIQACLNAPD Site 228
Xnag.paralog1 EPIVTQQEGR N LIQACLNAPD Site 228
Tpha.paralog1.duplicate EPIVTQQEGR N LIQACLNAPD Site 228
Xnag.paralog2 EPIIRDEEGK T LIRKCLNAGE Site 228
Species Residue at Site 316
in 'msaprobs'
muscle

The residue for every species at site 316 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Kpol.paralog1.duplicate EPIVTQQEGR N LIQACLNAPD Site 228
Sbay.Paralog2 EPLVREDEGK N LIKACINAPD Site 228
Ylip.ancMcm1 QPLVTKPEGK N LIQACLNASD Site 228
Cgla.paralog2 QPLIRDDPGK E LIRRCLNQDN Site 228
Xbla.paralog1 EPIVTQQEGR N LIQACLNAPD Site 228
Ndar.paralog1.duplicate EPIVTQQEGR N LIQACLNAPD Site 228
Ndar.paralog2 EPVIRDDEGK N LIRKCLGAPD Site 228
Ndar.paralog1 EPIVTQQEGR N LIQACLNVPD Site 228
Cgla.paralog1 EPIVTQQEGR N LIQACLNAPD Site 228
Xbla.paralog1.duplicate EPIVTQQEGR N LIQACLNAPD Site 228
Lelo.ancMcm1 QPLVTKPEGK N LIQACLNAPE Site 228
Xafr.paralog1 EPIVTQQEGR N LIQACLNAPD Site 228
Xafr.paralog2 EPVVINEEGK N LIRACLNAED Site 228
Ncas.paralog1 EPIVTQQEGR N LIQACLNAPD Site 228
ABR.ancMcm1 QPIVTQPEGK N LIQACLNAPE Site 228

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