Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 280 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 280 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 280 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 280 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 280
in 'msaprobs'
muscle

The residue for every species at site 280 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Tdel.paralog2 IMKKAYELSV L TGANVLLLIL Site 192
Clus.ancMcm1 IMKKAYELSV L TGTQVLLLVV Site 192
Tdel.paralog1 IMKKAFELSV L TGTQVLLLVV Site 192
Kpol.paralog2 LMKKCYELSV M TGVNMLLLVA Site 192
Kpol.paralog1 IMKKAFELSV L TGTQVLLLVV Site 192
Tpha.paralog1 IMKKAFELSV L TGTQVLLLVV Site 192
Tpha.paralog2 LMKKSYELSL I TGVNILLLIS Site 192
Klac.ancMcm1 IMKKAYELSV L TGTQVLLLVV Site 192
Cgla.paralog1.duplicate IMKKAFELSV L TGTQVLLLVV Site 192
Ncas.Paralog2 IMKKAYELSV L TGANVLLLIL Site 192
Kthe.ancMcm1 IMKKAYELSV L TGTQVLLLVV Site 192
Scer.Paralog2 IMKKAYELSV L TGANILLLIL Site 192
Kwal.ancMcm1 IMKKAYELSV L TGTQVLLLVV Site 192
Xafr.paralog1.duplicate IMKKAFELSV L TGTQVLLLVV Site 192
Scer.Paralog1 IMKKAFELSV L TGTQVLLLVV Site 192
Sbay.paralog1 IMKKAFELSV L TGTQVLLLVV Site 192
Ncas.paralog1.duplicate IMKKAFELSV L TGTQVLLLVV Site 192
Lklu.ancMcm1 IMKKAYELSV L TGTQVLLLIV Site 192
Calb.ancMcm1 IMKKAYELSV L TGTQVLLLVV Site 192
Ecym.ancMcm1 IMKKAYELSV L TGTQVLLLVV Site 192
Zrou.paralog2 IMKKAYELSV L TGANVLLLIL Site 192
Zrou.paralog1 IMKKAFELSV L TGTQVLLLVV Site 192
Xnag.paralog1 IMKKAFELSV L TGTQVLLLVV Site 192
Tpha.paralog1.duplicate IMKKAFELSV L TGTQVLLLVV Site 192
Xnag.paralog2 IMKKAYELSV L TGSNILLLIL Site 192
Species Residue at Site 280
in 'msaprobs'
muscle

The residue for every species at site 280 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Kpol.paralog1.duplicate IMKKAFELSV L TGTQVLLLVV Site 192
Sbay.Paralog2 IMKKAYELSV L TGANILLLIL Site 192
Ylip.ancMcm1 IMKKAYELSV L TGTQVLLLVV Site 192
Cgla.paralog2 IMKKAYELAV M TGANVLLLIL Site 192
Xbla.paralog1 IMKKAFELSV L TGTQVLLLVV Site 192
Ndar.paralog1.duplicate IMKKAFELSV L TGTQVLLLVV Site 192
Ndar.paralog2 IMKKAYELSV L TGANVLLLIL Site 192
Ndar.paralog1 IMKKAFELSV L TGTQVLLLVV Site 192
Cgla.paralog1 IMKKAFELSV L TGTQVLLLIV Site 192
Xbla.paralog1.duplicate IMKKAFELSV L TGTQVLLLVV Site 192
Lelo.ancMcm1 IMKKAYELSV L TGTQVLLLVV Site 192
Xafr.paralog1 IMKKAFELSV L TGTQVLLLVV Site 192
Xafr.paralog2 LMKKAYELSV M TGANILLLIV Site 192
Ncas.paralog1 IMKKAFELSV L TGTQVLLLIV Site 192
ABR.ancMcm1 IMKKAYELSV L TGTQVLLLVV Site 192

Generated by PhyloBot at 14:15, November 29th 2020
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