Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Select a Site:

Site 268 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 268 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 268 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 268 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 268
in 'msaprobs'
muscle

The residue for every species at site 268 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Tdel.paralog2 RRHVTFAKRR H GIMKKAYELS Site 180
Clus.ancMcm1 RRHITFSKRK A GIMKKAYELS Site 180
Tdel.paralog1 RRHVTFSKRK H GIMKKAFELS Site 180
Kpol.paralog2 RRQVTFSKRR I GLMKKCYELS Site 180
Kpol.paralog1 RRHVTFSKRK H GIMKKAFELS Site 180
Tpha.paralog1 RRHVTFSKRK H GIMKKAFELS Site 180
Tpha.paralog2 KRRLTYNTRR V GLMKKSYELS Site 180
Klac.ancMcm1 RRHITFSKRK H GIMKKAYELS Site 180
Cgla.paralog1.duplicate RRHVTFSKRK H GIMKKAFELS Site 180
Ncas.Paralog2 RRHVTFAKRR H GIMKKAYELS Site 180
Kthe.ancMcm1 RRHITFSKRK H GIMKKAYELS Site 180
Scer.Paralog2 RRHVTFSKRR H GIMKKAYELS Site 180
Kwal.ancMcm1 RRHITFSKRK H GIMKKAYELS Site 180
Xafr.paralog1.duplicate RRHVTFSKRK H GIMKKAFELS Site 180
Scer.Paralog1 RRHVTFSKRK H GIMKKAFELS Site 180
Sbay.paralog1 RRHVTFSKRK H GIMKKAFELS Site 180
Ncas.paralog1.duplicate RRHVTFSKRK H GIMKKAFELS Site 180
Lklu.ancMcm1 RRHITFSKRK H GIMKKAYELS Site 180
Calb.ancMcm1 RRHITFSKRK A GIMKKAYELS Site 180
Ecym.ancMcm1 RRHITFSKRK H GIMKKAYELS Site 180
Zrou.paralog2 RRHVTFAKRR H GIMKKAYELS Site 180
Zrou.paralog1 RRHVTFSKRK H GIMKKAFELS Site 180
Xnag.paralog1 RRHVTFSKRK H GIMKKAFELS Site 180
Tpha.paralog1.duplicate RRHVTFSKRK H GIMKKAFELS Site 180
Xnag.paralog2 RRQVTFAKRR H GIMKKAYELS Site 180
Species Residue at Site 268
in 'msaprobs'
muscle

The residue for every species at site 268 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Kpol.paralog1.duplicate RRHVTFSKRK H GIMKKAFELS Site 180
Sbay.Paralog2 RRHVTFSKRR H GIMKKAYELS Site 180
Ylip.ancMcm1 RRHITFSKRK A GIMKKAYELS Site 180
Cgla.paralog2 RRHVTFAKRR H GIMKKAYELA Site 180
Xbla.paralog1 RRHVTFSKRK H GIMKKAFELS Site 180
Ndar.paralog1.duplicate RRHVTFSKRK H GIMKKAFELS Site 180
Ndar.paralog2 RRHVTFAKRR H GIMKKAYELS Site 180
Ndar.paralog1 RRHVTFSKRK H GIMKKAFELS Site 180
Cgla.paralog1 RRHVTFSKRK H GIMKKAFELS Site 180
Xbla.paralog1.duplicate RRHVTFSKRK H GIMKKAFELS Site 180
Lelo.ancMcm1 RRHITFSKRK A GIMKKAYELS Site 180
Xafr.paralog1 RRHVTFSKRK H GIMKKAFELS Site 180
Xafr.paralog2 RRQVTFAKRR H GLMKKAYELS Site 180
Ncas.paralog1 RRHVTFSKRK H GIMKKAFELS Site 180
ABR.ancMcm1 RRHITFSKRK H GIMKKAYELS Site 180

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